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Efficient and fast querying and parsing of GTDB's data
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Logan Unitigs and Contigs
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Nail is an Alignment Inference tooL
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Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python with AI-powered optimization proposals
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Pairwise Sequence Alignment Library
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TAXnomic Profile Aggregation and STAndardisation
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Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees. We implement the ALE approach in the context of a reconciliation model (cf. http://arxiv.org/abs/1211.4606 ), which allows for the duplication…
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Assessing the quality of metagenome-derived genome bins using machine learning
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fast phage annotation program