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BasketballAnalyzeR

Run revdep_details(, "BasketballAnalyzeR") for more info

In both

  • checking dependencies in R code ... NOTE 
    Namespaces in Imports field not imported from:
  ‘circlize’ ‘hexbin’ ‘scales’ ‘sna’
  All declared Imports should be used.

BGGM

Run revdep_details(, "BGGM") for more info

In both

  • checking installed package size ... NOTE 
      installed size is 13.5Mb
  sub-directories of 1Mb or more:
    doc    3.3Mb
    help   1.2Mb
    libs   8.0Mb

bingat

Run revdep_details(, "bingat") for more info

In both

  • checking Rd cross-references ... NOTE 
    Package unavailable to check Rd xrefs: ‘genalg’

Blaunet

Run revdep_details(, "Blaunet") for more info

In both

  • checking examples ... ERROR

    Running examples in ‘Blaunet-Ex.R’ failed
The error most likely occurred in:

> ### Name: blau
> ### Title: Converts raw data into an object for Blau status analysis
> ### Aliases: blau
> 
> ### ** Examples
> 
> ##simple example
...
> ##example with relational data
> data(BSANet)
> square.data <- BSANet$square.data
> el <- BSANet$el
> 
> b <- blau(square.data, node.ids = 'person', ecology.ids = 'city', graph = el)
Error in Ops.factor(sources, targets) : 
  level sets of factors are different
Calls: blau ... as.network.data.frame -> .validate_edge_df -> which -> Ops.factor
Execution halted

  • checking package dependencies ... NOTE

    Packages suggested but not available for checking:
  'gWidgets', 'gWidgetsRGtk2'

  • checking dependencies in R code ... NOTE

    Namespaces in Imports field not imported from:
  ‘RGtk2’ ‘cairoDevice’ ‘ergm’ ‘foreign’ ‘haven’ ‘plot3D’ ‘plot3Drgl’
  ‘rgl’ ‘sna’ ‘statnet.common’
  All declared Imports should be used.

bootcluster

Run revdep_details(, "bootcluster") for more info

In both

  • checking dependencies in R code ... NOTE 
    Namespace in Imports field not imported from: ‘sna’
  All declared Imports should be used.

broom

Run revdep_details(, "broom") for more info

In both

  • checking package dependencies ... NOTE

    Packages suggested but not available for checking:
  'rgeos', 'spdep', 'spatialreg'

  • checking Rd cross-references ... NOTE

    Package unavailable to check Rd xrefs: ‘spatialreg’

CEMiTool

Run revdep_details(, "CEMiTool") for more info

In both

  • checking installed package size ... NOTE

      installed size is 14.5Mb
  sub-directories of 1Mb or more:
    data      4.8Mb
    doc       4.0Mb
    extdata   4.5Mb

  • checking R code for possible problems ... NOTE

    flip_vector: no visible global function definition for ‘setNames’
select_genes: no visible global function definition for ‘var’
get_hubs,CEMiTool : <anonymous>: no visible global function definition
  for ‘head’
get_merged_mods,CEMiTool: no visible global function definition for
  ‘as.dist’
get_mods,CEMiTool: no visible global function definition for ‘as.dist’
get_phi,CEMiTool: no visible global function definition for ‘tail’
get_phi,CEMiTool: no visible global function definition for ‘head’
mod_gene_num,CEMiTool: no visible binding for global variable ‘modules’
...
save_plots,CEMiTool: no visible global function definition for
  ‘dev.off’
Undefined global functions or variables:
  ..eq.label.. ..rr.label.. := Mean Variance as.dist data dev.off dist
  head modules num_genes setNames tail var
Consider adding
  importFrom("grDevices", "dev.off")
  importFrom("stats", "as.dist", "dist", "setNames", "var")
  importFrom("utils", "data", "head", "tail")
to your NAMESPACE file.

CeTF

Run revdep_details(, "CeTF") for more info

In both

  • checking examples ... ERROR

    Running examples in ‘CeTF-Ex.R’ failed
The error most likely occurred in:

> ### Name: netConditionsPlot
> ### Title: Network plot of gene-gene/gene-TFs interactions
> ### Aliases: netConditionsPlot
> 
> ### ** Examples
> 
> # loading a simulated counts data
...
Trios for gene    20
Trios for gene    30
Trios for gene    40
> 
> # plotting networks conditions
> netConditionsPlot(out)
Error in set.vertex.attribute.network(out, attrname = "vertex.names",  : 
  Inappropriate value given in set.vertex.attribute.
Calls: netConditionsPlot ... set.vertex.attribute -> set.vertex.attribute.network
Execution halted

  • checking installed package size ... NOTE

      installed size is  6.4Mb
  sub-directories of 1Mb or more:
    data   1.7Mb
    doc    4.0Mb

chorrrds

Run revdep_details(, "chorrrds") for more info

In both

  • checking dependencies in R code ... NOTE

    Namespace in Imports field not imported from: ‘forcats’
  All declared Imports should be used.

  • checking data for non-ASCII characters ... NOTE

      Note: found 4004 marked UTF-8 strings

CINNA

  • Version: 1.1.54
  • GitHub: NA
  • Source code: https://github.com/cran/CINNA
  • Date/Publication: 2021-01-28 15:00:02 UTC
  • Number of recursive dependencies: 135

Run revdep_details(, "CINNA") for more info

In both

  • checking dependencies in R code ... NOTE 
    Namespace in Imports field not imported from: ‘circlize’
  All declared Imports should be used.

CluMSID

Run revdep_details(, "CluMSID") for more info

In both

  • checking installed package size ... NOTE 
      installed size is  6.2Mb
  sub-directories of 1Mb or more:
    doc   5.6Mb

discourseGT

Run revdep_details(, "discourseGT") for more info

In both

  • checking examples ... ERROR

    Running examples in ‘discourseGT-Ex.R’ failed
The error most likely occurred in:

> ### Name: plot1Att
> ### Title: Plots Graphs using ggplot2 with one attribute
> ### Aliases: plot1Att
> 
> ### ** Examples
> 
> df <- sampleData1
...
> plot1Att(baseNet, prop = 20, graphmode = "fruchtermanreingold",
+ attribute = attdata$gender,
+ attribute.label = "Gender",
+ attribute.node.labels = attdata$node, attribute.nodesize = 12)
Error: `loops` is `FALSE`, but `x` contains loops.
The following values are affected:
	- `x[1, 1:2]`
	- `x[10, 1:2]`
	- `x[15, 1:2]`
Execution halted

  • checking dependencies in R code ... NOTE

    Namespaces in Imports field not imported from:
  ‘BiocManager’ ‘ggpubr’ ‘sna’
  All declared Imports should be used.

EGAnet

  • Version: 0.9.8
  • GitHub: NA
  • Source code: https://github.com/cran/EGAnet
  • Date/Publication: 2021-02-16 18:10:06 UTC
  • Number of recursive dependencies: 206

Run revdep_details(, "EGAnet") for more info

In both

  • checking installed package size ... NOTE 
      installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   4.0Mb

ergm

Run revdep_details(, "ergm") for more info

In both

  • checking installed package size ... NOTE 
      installed size is 10.5Mb
  sub-directories of 1Mb or more:
    doc    3.6Mb
    help   1.5Mb
    libs   3.9Mb

ergMargins

Run revdep_details(, "ergMargins") for more info

In both

  • checking dependencies in R code ... NOTE

    Namespaces in Imports field not imported from:
  ‘btergm’ ‘methods’ ‘sna’ ‘statnet’
  All declared Imports should be used.

  • checking Rd cross-references ... NOTE

    Package unavailable to check Rd xrefs: ‘margins’

  • checking LazyData ... NOTE

      'LazyData' is specified without a 'data' directory

ergmito

Run revdep_details(, "ergmito") for more info

In both

  • checking installed package size ... NOTE 
      installed size is  9.7Mb
  sub-directories of 1Mb or more:
    R      1.1Mb
    libs   7.9Mb

fcoex

Run revdep_details(, "fcoex") for more info

In both

  • checking examples ... ERROR

    Running examples in ‘fcoex-Ex.R’ failed
The error most likely occurred in:

> ### Name: mod_ora
> ### Title: Over Representation Analysis (ORA)
> ### Aliases: mod_ora mod_ora,fcoex-method
> 
> ### ** Examples
> 
> data("fc")
...
> gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool")
> gmt_in <- pathwayPCA::read_gmt(gmt_fname)
Warning in file(con, "rb") :
  file("") only supports open = "w+" and open = "w+b": using the former
Warning in readChar(file, nchars = nChars, useBytes = TRUE) :
  text connection used with readChar(), results may be incorrect
Error in readChar(file, nchars = nChars, useBytes = TRUE) : 
  invalid 'nchars' argument
Calls: <Anonymous> -> readChar
Execution halted

  • checking whether package ‘fcoex’ can be installed ... WARNING

    Found the following significant warnings:
  Warning: replacing previous import ‘Matrix::head’ by ‘utils::head’ when loading ‘fcoex’
See ‘/srv/scratch/z3528859/github/statnet/network/revdep/checks/fcoex/new/fcoex.Rcheck/00install.out’ for details.

  • checking Rd \usage sections ... WARNING

    Documented arguments not in \usage in documentation object '.plot_one_interaction':
  ‘...’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.

  • checking package dependencies ... NOTE

    Package suggested but not available for checking: ‘schex’

  • checking installed package size ... NOTE

      installed size is  8.0Mb
  sub-directories of 1Mb or more:
    data   3.7Mb
    doc    3.8Mb

fssemR

Run revdep_details(, "fssemR") for more info

In both

  • checking installed package size ... NOTE

      installed size is 16.8Mb
  sub-directories of 1Mb or more:
    libs  15.9Mb

  • checking LazyData ... NOTE

      'LazyData' is specified without a 'data' directory

genBaRcode

Run revdep_details(, "genBaRcode") for more info

In both

  • checking installed package size ... NOTE 
      installed size is  5.8Mb
  sub-directories of 1Mb or more:
    doc       1.1Mb
    extdata   3.9Mb

geomnet

Run revdep_details(, "geomnet") for more info

In both

  • checking examples ... ERROR

    Running examples in ‘geomnet-Ex.R’ failed
The error most likely occurred in:

> ### Name: football
> ### Title: College football games network (undirected)
> ### Aliases: football
> ### Keywords: datasets
> 
> ### ** Examples
> 
...
+   scale_colour_brewer("Conference", palette = "Paired")
Error: `loops` is `FALSE`, but `x` contains loops.
The following values are affected:
	- `x[604, 1:2]`
	- `x[605, 1:2]`
	- `x[610, 1:2]`
	- `x[615, 1:2]`
	- `x[617, 1:2]`
	- `x[618, 1:2]`
Execution halted

  • checking installed package size ... NOTE

      installed size is  5.2Mb
  sub-directories of 1Mb or more:
    data   2.6Mb
    doc    1.4Mb

GGally

Run revdep_details(, "GGally") for more info

In both

  • checking tests ... 
     ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
   4.     └─network:::.validate_edge_df(...)
  ── Error (test-ggnetworkmap.R:34:1): (code run outside of `test_that()`) ───────
  Error: `loops` is `FALSE`, but `x` contains loops.
  The following values are affected:
  	- `x[114, 1:2]`
  Backtrace:
      █
   1. └─network::network(flights, directed = TRUE) test-ggnetworkmap.R:34:0
   2.   ├─network::as.network(...)
   3.   └─network::as.network.data.frame(...)
   4.     └─network:::.validate_edge_df(...)
  
  [ FAIL 3 | WARN 1329 | SKIP 3 | PASS 563 ]
  Error: Test failures
  Execution halted

GGMnonreg

Run revdep_details(, "GGMnonreg") for more info

In both

  • checking dependencies in R code ... NOTE 
    Namespaces in Imports field not imported from:
  ‘Matrix’ ‘Rdpack’
  All declared Imports should be used.

ggnetwork

Run revdep_details(, "ggnetwork") for more info

In both

  • checking tests ...

     ERROR
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(ggnetwork)
  Loading required package: ggplot2
  > 
  > test_check("ggnetwork")
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure (test-ggnetwork.R:57:3): ggnetwork works ────────────────────────────
  `ggnetwork(n)` did not produce any warnings.
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 42 ]
  Error: Test failures
  Execution halted

  • checking dependencies in R code ... NOTE

    Namespaces in Imports field not imported from:
  ‘sna’ ‘utils’
  All declared Imports should be used.

GGPA

Run revdep_details(, "GGPA") for more info

In both

  • checking installed package size ... NOTE

      installed size is  8.8Mb
  sub-directories of 1Mb or more:
    doc    3.6Mb
    libs   3.9Mb

  • checking dependencies in R code ... NOTE

    Packages in Depends field not imported from:
  ‘network’ ‘scales’ ‘sna’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

  • checking compiled code ... NOTE

    File ‘GGPA/libs/GGPA.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Object: ‘3_Param.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

ggraph

Run revdep_details(, "ggraph") for more info

In both

  • checking installed package size ... NOTE 
      installed size is 17.1Mb
  sub-directories of 1Mb or more:
    doc    7.5Mb
    libs   7.9Mb

GOxploreR

Run revdep_details(, "GOxploreR") for more info

In both

  • checking installed package size ... NOTE 
      installed size is  9.2Mb
  sub-directories of 1Mb or more:
    R   8.5Mb

GRENITS

Run revdep_details(, "GRENITS") for more info

In both

  • checking installed package size ... NOTE

      installed size is 16.5Mb
  sub-directories of 1Mb or more:
    libs  16.0Mb

  • checking dependencies in R code ... NOTE

    Packages in Depends field not imported from:
  ‘Rcpp’ ‘RcppArmadillo’ ‘ggplot2’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

  • checking R code for possible problems ... NOTE

    .heatMap.ggplot: no visible global function definition for ‘ggplot’
.heatMap.ggplot: no visible global function definition for ‘aes’
.heatMap.ggplot: no visible binding for global variable ‘Var2’
.heatMap.ggplot: no visible binding for global variable ‘Var1’
.heatMap.ggplot: no visible global function definition for ‘geom_tile’
.heatMap.ggplot: no visible binding for global variable ‘value’
.heatMap.ggplot: no visible global function definition for
  ‘scale_fill_gradient’
.heatMap.ggplot: no visible global function definition for ‘theme’
.heatMap.ggplot: no visible global function definition for
...
.plotDistribParents.LargeMat: no visible global function definition for
  ‘scale_x_discrete’
.plotDistribParents.LargeMat: no visible global function definition for
  ‘scale_y_discrete’
.plotDistribParents.LargeMat: no visible global function definition for
  ‘facet_wrap’
Undefined global functions or variables:
  GeneNames Var1 Var2 aes element_blank element_text facet_wrap
  geom_tile ggplot ggtitle labs scale_fill_gradient scale_x_discrete
  scale_y_discrete theme value variable

gwdegree

Run revdep_details(, "gwdegree") for more info

In both

  • checking R code for possible problems ... NOTE

    simCCCent : <anonymous>: no visible global function definition for
  ‘simulate.formula’
Undefined global functions or variables:
  simulate.formula

  • checking LazyData ... NOTE

      'LazyData' is specified without a 'data' directory

ICON

Run revdep_details(, "ICON") for more info

Newly broken

  • checking tests ... 
     ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • On CRAN (1)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure (test-s3-network.R:21:3): as.network.ICON generic works ─────────────
  network::get.edge.attribute(converted_network, "attrib") not equal to test_obj$attrib.
  Lengths differ: 24 is not 25
  ── Failure (test-s3-network.R:24:3): as.network.ICON generic works ─────────────
  network::network.edgecount(converted_network) not equal to `NROW`.
  1/1 mismatches
  [1] 24 - 25 == -1
  
  [ FAIL 2 | WARN 0 | SKIP 1 | PASS 11 ]
  Error: Test failures
  Execution halted

leiden

Run revdep_details(, "leiden") for more info

In both

  • checking tests ... 
     ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
   3.   └─reticulate::import("numpy", delay_load = TRUE)
   4.     └─reticulate:::py_module_import(module, convert = convert)
  ── Error (test_multiplex.R:251:3): run with ModularityVertexPartition multiplexed and max_comm_size ──
  Error: Node size vector not the same size as the number of nodes.
  Backtrace:
      █
   1. ├─leiden::leiden(...) test_multiplex.R:251:2
   2. └─leiden:::leiden.list(...)
   3.   └─leiden:::find_partition_multiplex(...)
   4.     └─leidenalg$find_partition_multiplex(...)
   5.       └─reticulate:::py_call_impl(callable, dots$args, dots$keywords)
  
  [ FAIL 7 | WARN 0 | SKIP 8 | PASS 31 ]
  Error: Test failures
  Execution halted

lolog

Run revdep_details(, "lolog") for more info

Newly fixed

  • checking examples ... ERROR 
    Running examples in ‘lolog-Ex.R’ failed
The error most likely occurred in:

> ### Name: as.network.Rcpp_DirectedNet
> ### Title: Convert a DirectedNet to a network object
> ### Aliases: as.network.Rcpp_DirectedNet
> 
> ### ** Examples
> 
> el <- matrix(c(1,2),ncol=2)
> 
> #make an UndirectedNet with one edge and 5 nodes
> net <- new(UndirectedNet, el, 5L)
> 
> nw <- as.network(net)
Error in apply(x[, 1:2], 1, sort) : dim(X) must have a positive length
Calls: as.network ... as.network.matrix -> network.edgelist -> t -> apply
Execution halted

In both

  • checking installed package size ... NOTE 
      installed size is 34.0Mb
  sub-directories of 1Mb or more:
    libs  32.0Mb

MBCbook

Run revdep_details(, "MBCbook") for more info

In both

  • checking installed package size ... NOTE

      installed size is  5.3Mb
  sub-directories of 1Mb or more:
    data   5.1Mb

  • checking data for non-ASCII characters ... NOTE

      Note: found 66 marked UTF-8 strings

migraph

Run revdep_details(, "migraph") for more info

In both

  • checking installed package size ... NOTE 
      installed size is  5.8Mb

mpa

  • Version: 0.7.3
  • GitHub: NA
  • Source code: https://github.com/cran/mpa
  • Date/Publication: 2012-10-29 08:59:13
  • Number of recursive dependencies: 17

Run revdep_details(, "mpa") for more info

In both

  • checking DESCRIPTION meta-information ... NOTE

    Malformed Description field: should contain one or more complete sentences.

  • checking R code for possible problems ... NOTE

    NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File ‘mpa/R/zzz.R’:
  .First.lib calls:
    cat("\n mpa: CoWords Method")
    cat("\n ")
    cat("\n Universidad Nacional de Colombia")
    cat("\n ")
    cat("\n Elaborado por: Daniel Rodriguez <dhrodriguezt@unal.edu.co>")
    cat("\n                Campo Elias Pardo <cepardot@unal.edu.co>")
    cat("\n For help: ?mpa   \n\n")
...
  generate messages.
See section ‘Good practice’ in '?.onAttach'.

diagram.mpa: no visible global function definition for ‘abline’
diagram.mpa: no visible global function definition for ‘text’
Undefined global functions or variables:
  abline text
Consider adding
  importFrom("graphics", "abline", "text")
to your NAMESPACE file.

  • checking data for non-ASCII characters ... NOTE

      Note: found 6 marked UTF-8 strings

netdiffuseR

Run revdep_details(, "netdiffuseR") for more info

In both

  • checking installed package size ... NOTE 
      installed size is 13.0Mb
  sub-directories of 1Mb or more:
    doc    2.3Mb
    libs   8.9Mb

nethet

Run revdep_details(, "nethet") for more info

In both

  • checking whether package ‘nethet’ can be installed ... WARNING

    Found the following significant warnings:
  Warning: replacing previous import ‘mclust::dmvnorm’ by ‘mvtnorm::dmvnorm’ when loading ‘nethet’
  Warning: replacing previous import ‘multtest::update’ by ‘stats::update’ when loading ‘nethet’
See ‘/srv/scratch/z3528859/github/statnet/network/revdep/checks/nethet/new/nethet.Rcheck/00install.out’ for details.

  • checking R code for possible problems ... NOTE

    screen_shrink: no visible global function definition for
  ‘performance.pcor’
Undefined global functions or variables:
  performance.pcor

NetMix

Run revdep_details(, "NetMix") for more info

In both

  • checking installed package size ... NOTE 
      installed size is  8.2Mb
  sub-directories of 1Mb or more:
    libs   7.9Mb

NetworkChange

Run revdep_details(, "NetworkChange") for more info

In both

  • checking installed package size ... NOTE

      installed size is  8.7Mb
  sub-directories of 1Mb or more:
    doc   8.0Mb

  • checking dependencies in R code ... NOTE

    Namespace in Imports field not imported from: ‘sna’
  All declared Imports should be used.

networkDynamic

Run revdep_details(, "networkDynamic") for more info

In both

  • checking S3 generic/method consistency ... WARNING

    get.edge.attribute:
  function(x, ..., el)
get.edge.attribute.active:
  function(x, prefix, onset, terminus, length, at, rule,
           active.default, dynamic.only, require.active, return.tea,
           unlist)

get.edge.value:
  function(x, ...)
get.edge.value.active:
...

See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.

Found the following apparent S3 methods exported but not registered:
  get.edge.attribute.active get.edge.value.active
  get.network.attribute.active list.edge.attributes.active
  list.network.attributes.active
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.

  • checking Rd \usage sections ... NOTE

    S3 methods shown with full name in documentation object 'attribute.activity.functions':
  ‘get.edge.value.active’ ‘get.network.attribute.active’
  ‘list.edge.attributes.active’ ‘list.network.attributes.active’

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.

networksis

Run revdep_details(, "networksis") for more info

In both

  • checking R code for possible problems ... NOTE 
    simulate.sisnetwork: no visible global function definition for ‘var’
Undefined global functions or variables:
  var
Consider adding
  importFrom("stats", "var")
to your NAMESPACE file.

PAFit

Run revdep_details(, "PAFit") for more info

In both

  • checking whether package ‘PAFit’ can be installed ... WARNING 
    Found the following significant warnings:
  Warning: no DISPLAY variable so Tk is not available
See ‘/srv/scratch/z3528859/github/statnet/network/revdep/checks/PAFit/new/PAFit.Rcheck/00install.out’ for details.

PDN

  • Version: 0.1.0
  • GitHub: NA
  • Source code: https://github.com/cran/PDN
  • Date/Publication: 2017-11-03 23:27:43 UTC
  • Number of recursive dependencies: 54

Run revdep_details(, "PDN") for more info

In both

  • checking dependencies in R code ... NOTE 
    Namespace in Imports field not imported from: ‘glmnet’
  All declared Imports should be used.

PhosR

Run revdep_details(, "PhosR") for more info

In both

  • checking for hidden files and directories ... NOTE

    Found the following hidden files and directories:
  .travis.yml
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.

  • checking installed package size ... NOTE

      installed size is  8.7Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    doc    4.0Mb

  • checking dependencies in R code ... NOTE

    Unexported objects imported by ':::' calls:
  ‘BiocGenerics:::replaceSlots’ ‘S4Vectors:::disableValidity’
  ‘SummarizedExperiment:::.SummarizedExperiment.charbound’
  See the note in ?`:::` about the use of this operator.

pkggraph

Run revdep_details(, "pkggraph") for more info

In both

  • checking installed package size ... NOTE 
      installed size is  8.5Mb
  sub-directories of 1Mb or more:
    doc   8.0Mb

predictionet

Run revdep_details(, "predictionet") for more info

In both

  • checking for hidden files and directories ... NOTE

    Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.

  • checking dependencies in R code ... NOTE

    Packages in Depends field not imported from:
  ‘catnet’ ‘igraph’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.

  • checking R code for possible problems ... NOTE

    .build.regression.regrnet: no visible global function definition for
  ‘formula’
.build.regression.regrnet: no visible global function definition for
  ‘lm’
.build2.mim: no visible global function definition for ‘cor’
.exportGML: no visible global function definition for ‘vcount’
.exportGML: no visible global function definition for ‘ecount’
.get.ii4triplets.gaussian: no visible global function definition for
  ‘cor’
.pred.onegene.bayesnet.fs : <anonymous>: no visible global function
...
Undefined global functions or variables:
  as cnMatParents coefficients complete.cases cor ecount formula lm
  quantile sessionInfo vcount
Consider adding
  importFrom("methods", "as")
  importFrom("stats", "coefficients", "complete.cases", "cor", "formula",
             "lm", "quantile")
  importFrom("utils", "sessionInfo")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

  • checking compiled code ... NOTE

    File ‘predictionet/libs/predictionet.so’:
  Found ‘rand’, possibly from ‘rand’ (C)
    Object: ‘mrnet_ensemble_standalone.o’
  Found ‘srand’, possibly from ‘srand’ (C)
    Object: ‘mrnet_ensemble_standalone.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

PubScore

Run revdep_details(, "PubScore") for more info

In both

  • checking installed package size ... NOTE

      installed size is 16.4Mb
  sub-directories of 1Mb or more:
    data   8.1Mb
    doc    8.0Mb

  • checking R code for possible problems ... NOTE

    get_literature_score: no visible binding for global variable
  ‘gene2pubmed_db’
get_literature_score: no visible binding for global variable
  ‘hgcn_entrez_reference’
get_sum_of_weights: no visible binding for global variable ‘Genes’
get_sum_of_weights: no visible binding for global variable ‘Topic’
plot_literature_score: no visible binding for global variable ‘Genes’
plot_literature_score: no visible binding for global variable ‘Topic’
plot_literature_score: no visible binding for global variable
  ‘number_of_articles’
show,PubScore: no visible binding for global variable ‘pub’
Undefined global functions or variables:
  Genes Topic gene2pubmed_db hgcn_entrez_reference number_of_articles
  pub

quanteda.textplots

Run revdep_details(, "quanteda.textplots") for more info

In both

  • checking LazyData ... NOTE 
      'LazyData' is specified without a 'data' directory

RSiena

  • Version: 1.3.0
  • GitHub: NA
  • Source code: https://github.com/cran/RSiena
  • Date/Publication: 2021-05-10 16:22:15 UTC
  • Number of recursive dependencies: 21

Run revdep_details(, "RSiena") for more info

In both

  • checking installed package size ... NOTE 
      installed size is 20.1Mb
  sub-directories of 1Mb or more:
    R      2.0Mb
    libs  17.2Mb

sand

Run revdep_details(, "sand") for more info

In both

  • checking data for non-ASCII characters ... NOTE 
      Note: found 6 marked UTF-8 strings

SBICgraph

Run revdep_details(, "SBICgraph") for more info

In both

  • checking dependencies in R code ... NOTE

    Namespace in Imports field not imported from: ‘network’
  All declared Imports should be used.

  • checking LazyData ... NOTE

      'LazyData' is specified without a 'data' directory

sparsebnUtils

Run revdep_details(, "sparsebnUtils") for more info

In both

  • checking Rd cross-references ... NOTE 
    Package unavailable to check Rd xrefs: ‘sparsebn’

statnetWeb

Run revdep_details(, "statnetWeb") for more info

In both

  • checking LazyData ... NOTE 
      'LazyData' is specified without a 'data' directory

tergmLite

Run revdep_details(, "tergmLite") for more info

In both

  • checking LazyData ... NOTE 
      'LazyData' is specified without a 'data' directory

tidygraph

Run revdep_details(, "tidygraph") for more info

In both

  • checking LazyData ... NOTE 
      'LazyData' is specified without a 'data' directory

vivid

  • Version: 0.1.0
  • GitHub: NA
  • Source code: https://github.com/cran/vivid
  • Date/Publication: 2021-04-09 09:10:02 UTC
  • Number of recursive dependencies: 205

Run revdep_details(, "vivid") for more info

In both

  • checking tests ...

     ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  `zpath` has type 'NULL', not 'list'.
  ── Failure (test_plots.R:203:3): Test zpath ────────────────────────────────────
  `zpath1` has type 'NULL', not 'character'.
  ── Failure (test_plots.R:206:3): Test zpath ────────────────────────────────────
  `zpath2` has type 'NULL', not 'character'.
  ── Failure (test_plots.R:208:3): Test zpath ────────────────────────────────────
  `zPath(aqVivi, cutoff = 100)` did not throw the expected error.
  Backtrace:
      █
   1. └─testthat::expect_error(zPath(aqVivi, cutoff = 100)) test_plots.R:208:2
   2.   └─testthat:::expect_condition_matching(...)
  
  [ FAIL 15 | WARN 0 | SKIP 0 | PASS 50 ]
  Error: Test failures
  Execution halted

  • checking package dependencies ... NOTE

    Package suggested but not available for checking: ‘zenplots’

  • checking dependencies in R code ... NOTE

    Namespaces in Imports field not imported from:
  ‘RColorBrewer’ ‘colorspace’ ‘tidyr’
  All declared Imports should be used.

xergm.common

Run revdep_details(, "xergm.common") for more info

In both

  • checking Rd cross-references ... NOTE 
    Package unavailable to check Rd xrefs: ‘RSiena’