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Add ability to give boundaries in addition to window size to slurm setup script
#52
opened Sep 26, 2024 by
stefinfection
Keep pre-filtered germline vcf
AF Meeting Request
enhancement
New feature or request
#48
opened Sep 16, 2024 by
stefinfection
Divergence between whole genome mode and windowed mode results
bug
Something isn't working
#47
opened Sep 16, 2024 by
stefinfection
Optimize allele frequency calculation
AF Meeting Request
enhancement
New feature or request
#46
opened Sep 16, 2024 by
stefinfection
Write genotyper based off of bam files
AF Meeting Request
enhancement
New feature or request
#45
opened Sep 16, 2024 by
stefinfection
Address Illumina chemistry problem which interferes with tandem duplication calling
AF Meeting Request
bug
Something isn't working
enhancement
New feature or request
#44
opened Sep 16, 2024 by
stefinfection
Strand bias filter is not working properly - SG can reproduce?
bug
Something isn't working
#43
opened Sep 16, 2024 by
stefinfection
Test if individual variants with mpileup takes too long for full genome run
#38
opened Sep 6, 2024 by
stefinfection
Determine why throttled run vs container run have different results outside of +-1% expectation
#35
opened Sep 6, 2024 by
stefinfection
Find genotype empty reporting bug in rufus proper
bug
Something isn't working
#34
opened Sep 6, 2024 by
stefinfection
Merge supplemental bams and hash lists + rename to more appropriate things
#33
opened Sep 6, 2024 by
stefinfection
Add in all options to be passed from container launch to runRufus.sh
#32
opened Sep 6, 2024 by
stefinfection
Add inherited removal at end of rufus run for either combined file or single run
#29
opened Aug 12, 2024 by
stefinfection
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