Genomics of Disease in Wildlife Workshop, Summer 2017

Course agenda

This page contains links to course material from GDW 2017

We will post as much material as possible as soon as possible. Our intent is to leave this material online indefinitely.

Sunday 6/4/17

Introduction to GDW lecture

Introduction to genomics and sequencing Lecture

Introduction to databases and online resources lecture

BLAST lecture

BLAST exercise

Downloading exercise

Monday 6/5/17

NGS raw data and QC lecture

NGS raw data and QC exercise

Sequence mapping lecture

Sequence assembly lecture

Mapping and de novo assembly exercise

Metagenomics lecture

Tuesday 6/6/17

Whole Genome Alignment lecture

Wednesday 6/7/17

Sequence alignments: purpose, assessment and application lecture

Intro to molecular phylogenetics lecture

Beast exercise

Thursday 6/8/17

Molecular clocks, gene trees and species trees lecture

Selection lecture

Testing for selection in genes

PAML exercise material

Thursday thought exercise

Detecting selection exercise

Friday 6/9/17

Coming soon

Saturday 6/10/17

Intrahost and pooled variation lecture

Intrahost variation exercise

Horizon Scan Exercise