Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Input format is reported as interleaved when it's not #49

Closed
terrycojones opened this issue Jan 18, 2017 · 2 comments
Closed

Input format is reported as interleaved when it's not #49

terrycojones opened this issue Jan 18, 2017 · 2 comments

Comments

@terrycojones
Copy link
Contributor

When I provide a regular FASTA file to phyml using -i file.fasta the initial overview printed by the program includes the line

                . Sequence format:                               interleaved

which seems to be wrong. It would be good to fix this because it makes the user wonder if it's just an error in what's being printed in the summary or if phyml really did try to read the FASTA in some interleaved way.
@stephaneguindon
Copy link
Owner

interleaved is the default format in PhyML so I am not sure I understand what is wrong here... Ideally the program would bail out before printing this sort of information but I don't think it is too much of an issue that it does.

@terrycojones
Copy link
Contributor Author

OK, I was confused here - sorry! Closing.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@terrycojones @stephaneguindon