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UCSF
- San Francisco, CA
- http://floorlab.org
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extract-transcript-regions Public
For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and CDS).
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homebrew-science Public
Forked from ahmadia/homebrew-science
Scientific formulae for the Homebrew package manager
Ruby
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A simple simulator for biochemical competitive binding experiments, e.g. fluorescence polarization.
Python
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transcriptome-properties Public
For bioinformatic analysis of RNA transcripts. Calculate various properties of an input transcriptome such as length, GC content, and number of exons per transcript or transcript region.
Python 4