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St. Jude Children's Research Hospital

Finding Cures, Saving Children.

Popular repositories

  1. learngenomics.dev learngenomics.dev Public

    A guided, intuitive introduction to genomics for software engineers. Curated by the community.

    JavaScript 344 30

  2. ROSE ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    Python 38 12

  3. CICERO CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    Perl 35 21

  4. ChIPseqSpikeInFree ChIPseqSpikeInFree Public

    A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

    R 30 13

  5. RNAIndel RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    Python 21 9

  6. cis-x cis-x Public

    Search for activating regulatory variants in the tumor genome

    Perl 14 8

Repositories

18 results for all repositories written in Python sorted by last updated
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  • ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    stjude/ROSE’s past year of commit activity
    Python 38 12 7 0 Updated Aug 2, 2024
  • DeepBrainIPP Public

    Automated Brain Structures Segmentation Framework

    stjude/DeepBrainIPP’s past year of commit activity
    Python 7 Apache-2.0 3 0 1 Updated Mar 22, 2024
  • doCNA Public
    stjude/doCNA’s past year of commit activity
    Python 2 1 1 0 Updated Feb 27, 2024
  • RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    stjude/RNAIndel’s past year of commit activity
    Python 21 Apache-2.0 9 0 0 Updated Jan 23, 2024
  • cosima Public
    stjude/cosima’s past year of commit activity
    Python 0 0 0 0 Updated Jan 5, 2024
  • WARDEN Public

    Source code for the WARDEN DNAnexus apps

    stjude/WARDEN’s past year of commit activity
    Python 1 0 0 0 Updated Nov 20, 2023
  • SVIndelGenotyper Public

    Analysis of error profiles of Indels and structural variants in deep sequencing data

    stjude/SVIndelGenotyper’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Aug 28, 2023
  • SICER2 Public

    sicer2

    stjude/SICER2’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Aug 21, 2023
  • PrimerTK Public

    A toolkit to design standard primers, multiplexed primers, and primers around SV's

    stjude/PrimerTK’s past year of commit activity
    Python 11 Apache-2.0 4 5 1 Updated Oct 29, 2022
  • BAM2GFF Public Forked from BradnerLab/pipeline

    BAMtoGFF, matrix density, plot visualizations

    stjude/BAM2GFF’s past year of commit activity
    Python 4 47 0 0 Updated Jun 30, 2022
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