fix: explicitly sort by RG ID. This matches the sorting from bam-to-f… #64
Workflow file for this run
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name: Workflows Sprocket Lint | |
on: [push] | |
jobs: | |
sprocket_lint: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Rust | |
uses: actions-rust-lang/setup-rust-toolchain@v1 | |
with: | |
toolchain: nightly | |
- name: Install sprocket | |
run: | | |
cargo install sprocket | |
- name: Run sprocket | |
run: | | |
EXITCODE=0 | |
echo "Checking WDL files using \`sprocket lint\`." | |
shopt -s extglob | |
files=$(find ./!(template) -name '*.wdl') | |
for file in $files; do | |
echo " [***] $file [***]" | |
sprocket lint "$file" | |
EXITCODE=$(($? || EXITCODE)) | |
done | |
exit $EXITCODE |