Entry point: StartRna3DViewer All classes needed for this program can be found in package "_rna_3d_viewer".
The program is able to read in a PDB file containing RNA residues. From these atoms of the read in residues the programs then generates a 3D-Structure. SHIFT + LEFT_CLICK + MOUSE: ZOOM LEFT_CLICK + MOUSE: SPIN Furthermore, the hydrogen bonds can be made visible under "VIEW". This menu has also further options like "Base Coloring" or "Type Coloring". By clicking on SecStruct -> "Open SecStruct" another window pops up where the primary and secondary structure can be drawn. Moreover, the calculated pseudoknots can be drawn, too. Every nucleotide in every structure type is selectable, making it yellow in all structures. If a nucleotide pairing line in the secondary structure was clicked, then the corresponding nucleotides are highlighted in the primary and tertiary structure, respectively.
secondary structure classes provided by Prof. Huson
pdb record and parsing classes
contains classes for the extraction of relevant and special coordinates for drawing out of a residue
here classes are stored that represent a structure, overall abstract structure is "ANucleotideStructure" except for "SecondaryStructure"
provides classes to build 3D structures
classes for the secondary and primary structure representations view
classes for the 3D viewer view
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