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Bump snakemake from 6.7.0 to 6.8.0 in /dependencies #1962

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merged 1 commit into from
Sep 14, 2021

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@dependabot dependabot bot commented on behalf of github Sep 13, 2021

Bumps snakemake from 6.7.0 to 6.8.0.

Release notes

Sourced from snakemake's releases.

snakemake v6.8.0

Features

Bug Fixes

  • AmbiguousRuleException bug caused by weak ordering of rules (#1124) (7f54c39)
  • Bugfix tes add files (#1133) (8892bf2)
  • Disable Persistence cache for snakemake jobs (#1159) (7110f9d)
  • efficient job status checking when using DRMAA API (this should yield much better parallelization and performance when using --drmaa) (#1156) (ac004cb)
  • improved error handling for cluster status scripts and smarter job selector choice in case of cluster submission (use greedy for single jobs). (#1142) (48d2dd9)
  • Initialize assignments dictionary when setting rule-based resources (#1154) (68c13fd)
  • key error when handling FileNotFoundError in input functions. (#1138) (d25f04d)
  • linting of remote snakefiles (#1131) (2104e10)

Performance Improvements

  • improve job selection performance in case of potential ambiguity that is resolved by comprehensive ruleorder statements. (#1147) (921f4f7)
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Bumps [snakemake](https://github.com/snakemake/snakemake) from 6.7.0 to 6.8.0.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Commits](snakemake/snakemake@v6.7.0...v6.8.0)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Sep 13, 2021
@admiralAwkbar admiralAwkbar merged commit a0d7037 into master Sep 14, 2021
@admiralAwkbar admiralAwkbar deleted the dependabot/pip/dependencies/snakemake-6.8.0 branch September 14, 2021 13:29
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