susannasiebert
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648 contributions in the last year
Activity overview
Contributed to
griffithlab/civic-v2,
griffithlab/pVACtools,
griffithlab/civicpy
and 12 other
repositories
Contribution activity
March 2023
Created 1 commit in 1 repository
Created 1 repository
Created a pull request in KarchinLab/mhcnuggets that received 1 comment
Improve how rank file name is determined
The current implementation will fail if the output contains a . in a directory with error such as this:
Traceback (most recent call last): File "/u…
+5
−3
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1
comment
Opened 14 other pull requests in 5 repositories
griffithlab/pVACtools
10
merged
- add new pVACview demo files
- Add ability to run standalone reference similarity command on aggregate report
- pVACview bug fix when anchor parameter is turned on
- Fix bug with problematic AA code where it wouldn't identify more than one position of a problematic AA
- Additional pVACview updates and bugfixes
- Write prediction tmp files to the pvacseq run's output tmp directory
- Update reference protome similarity step to work with new mutation position format
-
Fix some issue with new aggregate report feature on
pvacseq generate_protein_fasta - Output a list of unsupported NetMHCstabpan alleles
- Allow aggregate report as an input to the pvacseq generate_protein_fa…