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sveinugu · Aug 23, 2023 · fcbf388 · fcbf388
1 parent 0fa3508
commit fcbf388
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Showing 2 changed files with 9 additions and 6 deletions.
diff --git a/lib/galaxy/tool_util/parser/xml.py b/lib/galaxy/tool_util/parser/xml.py
@@ -174,9 +174,13 @@ def parse_environment_variables(self):
             # TODO: refactor - horrible code
             if inject:
                 assert inject_validates(inject)
-                assert not template if inject != "entry_point_path" else template, "Cannot specify inject and environment variable template."
+                assert (
+                    not template if inject != "entry_point_path" else template
+                ), "Cannot specify inject and environment variable template."
             if template:
-                assert not inject or inject == "entry_point_path", "Cannot specify inject and environment variable template."
+                assert (
+                    not inject or inject == "entry_point_path"
+                ), "Cannot specify inject and environment variable template."
             definition = {
                 "name": environment_variable_el.get("name"),
                 "template": template,

diff --git a/lib/galaxy/tools/evaluation.py b/lib/galaxy/tools/evaluation.py
@@ -660,14 +660,13 @@ def _build_environment_variables(self):
                 is_template = False
             elif inject and inject == "entry_point_path" and environment_variable_template:
                 from galaxy.managers.interactivetool import InteractiveToolManager
+
                 entry_point_name = environment_variable_template
-                matching_eps = [ep for ep in
-                                self.job.interactivetool_entry_points if
-                                ep.name == entry_point_name]
+                matching_eps = [ep for ep in self.job.interactivetool_entry_points if ep.name == entry_point_name]
                 if matching_eps:
                     entry_point = matching_eps[0]
                     entry_point_path = InteractiveToolManager(self.app).get_entry_point_path(self.app, entry_point)
-                    environment_variable_template = entry_point_path.rstrip('/')
+                    environment_variable_template = entry_point_path.rstrip("/")
                 else:
                     environment_variable_template = ""
                 is_template = False