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Nelle cancels the run, but now has extra stats- files which are matched #625

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gcapes opened this issue Sep 21, 2017 · 2 comments
Closed

Nelle cancels the run, but now has extra stats- files which are matched #625

gcapes opened this issue Sep 21, 2017 · 2 comments

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@gcapes
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gcapes commented Sep 21, 2017

I'll submit a PR as this has caught me twice now. We just need to delete the stats-* files before rerunning the loop.
gcapes added a commit to gcapes/shell-novice that referenced this issue Sep 22, 2017
@gcapes
Remove output files before rerunning goostats loop
351bb94 
Fix swcarpentry#625.
@gcapes gcapes mentioned this issue Sep 22, 2017
Merged
@shwina
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shwina commented Oct 4, 2017

Generally I get around this by using the pattern NENE*.txt to specify the list of files. I much prefer avoiding using rm with a wildcard as much as possible.

Does this sound reasonable?

@gcapes
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gcapes commented Oct 4, 2017

Yes, it sounds like a more robust approach. I'll rebase my branch now so you should get a different commit which fixes the issue in a different way.
Thanks

gcapes added a commit to gcapes/shell-novice that referenced this issue Oct 4, 2017
@gcapes
Select input files for goostats more robustly
fb392de 
Lesson previously selected the output files from the previous run,
in addition to the required input files.
This edit sidesteps the need to delete old output files before
re-running goostats.

Fix swcarpentry#625.
gcapes added a commit to gcapes/shell-novice that referenced this issue Oct 25, 2017
@gcapes
Only select raw data files rather than processed too
fed2043 
Fix swcarpentry#625 for episode 6 (loops episode already fixed).
@gcapes gcapes mentioned this issue Oct 25, 2017
Merged
zkamvar pushed a commit that referenced this issue May 2, 2023
@gcapes
Select input files for goostats more robustly
9be56ee 
Lesson previously selected the output files from the previous run,
in addition to the required input files.
This edit sidesteps the need to delete old output files before
re-running goostats.

Fix #625.
zkamvar pushed a commit that referenced this issue May 2, 2023
@gcapes
Only select raw data files rather than processed too
9edf99d 
Fix #625 for episode 6 (loops episode already fixed).
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@shwina @gcapes