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At the moment vectorization result is placed at the very top of layer's stack.
Here's a sample file -
After vectorization it looks like this:
I suggest to take a look at code of `layermove" action - https://github.com/ankit-kumar-dwivedi/synfig/blob/master/synfig-studio/src/synfigapp/actions/layermove.cpp#L149 ^__^