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Merge into master for 1.4.8 rel #341

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merged 100 commits into from Aug 9, 2016

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0u812 commented Jul 24, 2016

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0u812 and others added some commits Jan 23, 2016

Merge pull request #274 from sys-bio/steps-test
Test position vs keyword args in simulate()
rename simulateOptions member var to __simulateOptions and remove all…
… references to simulateOptions from docs, fix #278
Merge pull request #282 from sys-bio/new-simulate
Implement new simulate function
Update roadrunner.i
Fixed typo in comment

0u812 and others added some commits Mar 18, 2016

Revert "revert #306"
This reverts commit a008e02.
Changes to make hstep a stepsize always
Fixed the two lines where the external integrator was called using integrate(tStart, tEnd) instead of integrate(tStart, stepSize)
Merge pull request #340 from Peter-J/gillespie-fixed-step-fix
Another fix for #336, Made changes so hstep is a stepsize always

@0u812 0u812 merged commit 611bd53 into master Aug 9, 2016

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