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This repository has been archived by the owner on Jan 20, 2021. It is now read-only.

EOFException when installing with JRuby 1.5.6 #95

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johnjohndoe opened this issue Mar 16, 2015 · 4 comments
Closed

EOFException when installing with JRuby 1.5.6 #95

johnjohndoe opened this issue Mar 16, 2015 · 4 comments

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@johnjohndoe
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I cloned v.0.7.6 aka e40f516 to my machine running Ubuntu 14.10. and JRuby 1.5.6. Then I run:

jruby -S gem install tabula-extractor

This fails with the following console output:

Exception in thread "main" java.io.EOFException
    at java.io.DataInputStream.readFully(DataInputStream.java:197)
    at java.io.DataInputStream.readUTF(DataInputStream.java:609)
    at java.io.DataInputStream.readUTF(DataInputStream.java:564)
    at org.joda.time.tz.ZoneInfoProvider.readZoneInfoMap(ZoneInfoProvider.java:278)
    at org.joda.time.tz.ZoneInfoProvider.loadZoneInfoMap(ZoneInfoProvider.java:256)
    at org.joda.time.tz.ZoneInfoProvider.<init>(ZoneInfoProvider.java:123)
    at org.joda.time.tz.ZoneInfoProvider.<init>(ZoneInfoProvider.java:82)
    at org.joda.time.DateTimeZone.getDefaultProvider(DateTimeZone.java:490)
    at org.joda.time.DateTimeZone.setProvider0(DateTimeZone.java:444)
    at org.joda.time.DateTimeZone.<clinit>(DateTimeZone.java:116)
    at org.jruby.RubyTime.getLocalTimeZone(RubyTime.java:96)
    at org.jruby.RubyTime$1.allocate(RubyTime.java:171)
    at org.jruby.RubyClass.allocate(RubyClass.java:220)
    at org.jruby.RubyTime.newInstance(RubyTime.java:655)
    at org.jruby.RubyTime$s_method_0_0$RUBYINVOKER$newInstance.call(org/jruby/RubyTime$s_method_0_0$RUBYINVOKER$newInstance.gen:65535)
    at org.jruby.runtime.callsite.CachingCallSite.cacheAndCall(CachingCallSite.java:289)
    at org.jruby.runtime.callsite.CachingCallSite.call(CachingCallSite.java:108)
    at org.jruby.ast.CallNoArgNode.interpret(CallNoArgNode.java:61)
    at org.jruby.ast.CallNoArgNode.interpret(CallNoArgNode.java:61)
    at org.jruby.ast.CallOneArgNode.interpret(CallOneArgNode.java:57)
    at org.jruby.ast.LocalAsgnNode.interpret(LocalAsgnNode.java:123)
    at org.jruby.ast.NewlineNode.interpret(NewlineNode.java:104)
    at org.jruby.ast.BlockNode.interpret(BlockNode.java:71)
    at org.jruby.evaluator.ASTInterpreter.evalClassDefinitionBody(ASTInterpreter.java:196)
    at org.jruby.ast.ClassNode.interpret(ClassNode.java:141)
    at org.jruby.ast.NewlineNode.interpret(NewlineNode.java:104)
    at org.jruby.ast.BlockNode.interpret(BlockNode.java:71)
    at org.jruby.ast.RootNode.interpret(RootNode.java:129)
    at org.jruby.Ruby.loadFile(Ruby.java:2553)
    at org.jruby.runtime.load.ExternalScript.load(ExternalScript.java:61)
    at org.jruby.runtime.load.LoadService.tryLoadingLibraryOrScript(LoadService.java:671)
    at org.jruby.runtime.load.LoadService.smartLoad(LoadService.java:314)
    at org.jruby.runtime.load.LoadService.require(LoadService.java:357)
    at org.jruby.runtime.load.LoadService.lockAndRequire(LoadService.java:289)
    at org.jruby.RubyKernel.requireCommon(RubyKernel.java:984)
    at org.jruby.RubyKernel.require(RubyKernel.java:967)
    at org.jruby.RubyKernel$s_method_1_0$RUBYFRAMEDINVOKER$require.call(org/jruby/RubyKernel$s_method_1_0$RUBYFRAMEDINVOKER$require.gen:65535)
    at org.jruby.internal.runtime.methods.JavaMethod$JavaMethodOneOrNBlock.call(JavaMethod.java:319)
    at org.jruby.runtime.callsite.CachingCallSite.cacheAndCall(CachingCallSite.java:309)
    at org.jruby.runtime.callsite.CachingCallSite.call(CachingCallSite.java:148)
    at org.jruby.ast.FCallOneArgNode.interpret(FCallOneArgNode.java:36)
    at org.jruby.ast.NewlineNode.interpret(NewlineNode.java:104)
    at org.jruby.ast.BlockNode.interpret(BlockNode.java:71)
    at org.jruby.ast.RootNode.interpret(RootNode.java:129)
    at org.jruby.Ruby.loadFile(Ruby.java:2553)
    at org.jruby.runtime.load.ExternalScript.load(ExternalScript.java:61)
    at org.jruby.runtime.load.LoadService.tryLoadingLibraryOrScript(LoadService.java:671)
    at org.jruby.runtime.load.LoadService.smartLoad(LoadService.java:314)
    at org.jruby.runtime.load.LoadService.require(LoadService.java:357)
    at org.jruby.runtime.load.LoadService.lockAndRequire(LoadService.java:289)
    at org.jruby.RubyKernel.requireCommon(RubyKernel.java:984)
    at org.jruby.RubyKernel.require(RubyKernel.java:967)
    at org.jruby.RubyKernel$s_method_1_0$RUBYFRAMEDINVOKER$require.call(org/jruby/RubyKernel$s_method_1_0$RUBYFRAMEDINVOKER$require.gen:65535)
    at org.jruby.internal.runtime.methods.JavaMethod$JavaMethodOneOrNBlock.call(JavaMethod.java:319)
    at org.jruby.runtime.callsite.CachingCallSite.cacheAndCall(CachingCallSite.java:309)
    at org.jruby.runtime.callsite.CachingCallSite.call(CachingCallSite.java:148)
    at org.jruby.ast.FCallOneArgNode.interpret(FCallOneArgNode.java:36)
    at org.jruby.ast.NewlineNode.interpret(NewlineNode.java:104)
    at org.jruby.ast.BlockNode.interpret(BlockNode.java:71)
    at org.jruby.ast.RootNode.interpret(RootNode.java:129)
    at org.jruby.Ruby.loadFile(Ruby.java:2553)
    at org.jruby.runtime.load.ExternalScript.load(ExternalScript.java:61)
    at org.jruby.runtime.load.LoadService.tryLoadingLibraryOrScript(LoadService.java:671)
    at org.jruby.runtime.load.LoadService.smartLoad(LoadService.java:314)
    at org.jruby.runtime.load.LoadService.require(LoadService.java:357)
    at org.jruby.runtime.load.LoadService.lockAndRequire(LoadService.java:289)
    at org.jruby.RubyKernel.requireCommon(RubyKernel.java:984)
    at org.jruby.RubyKernel.require(RubyKernel.java:967)
    at org.jruby.RubyKernel$s_method_1_0$RUBYFRAMEDINVOKER$require.call(org/jruby/RubyKernel$s_method_1_0$RUBYFRAMEDINVOKER$require.gen:65535)
    at org.jruby.internal.runtime.methods.JavaMethod$JavaMethodOneOrNBlock.call(JavaMethod.java:319)
    at org.jruby.runtime.callsite.CachingCallSite.cacheAndCall(CachingCallSite.java:309)
    at org.jruby.runtime.callsite.CachingCallSite.call(CachingCallSite.java:148)
    at usr.lib.jruby.bin.gem.__file__(gem:8)
    at usr.lib.jruby.bin.gem.load(gem)
    at org.jruby.Ruby.runScript(Ruby.java:692)
    at org.jruby.Ruby.runNormally(Ruby.java:575)
    at org.jruby.Ruby.runFromMain(Ruby.java:418)
    at org.jruby.Main.run(Main.java:286)
    at org.jruby.Main.run(Main.java:128)
    at org.jruby.Main.main(Main.java:97)

System.java:-2:in `arraycopy': java.lang.ArrayIndexOutOfBoundsException
    from DefaultResolver.java:111:in `makeTime'
    from DefaultResolver.java:277:in `create'
    from DefaultResolver.java:317:in `handleScalar'
    from DefaultResolver.java:435:in `orgHandler'
    from DefaultResolver.java:455:in `node_import'
    from org/yecht/ruby/DefaultResolver$s_method_1_0$RUBYINVOKER$node_import.gen:65535:in `call'
    from CachingCallSite.java:146:in `call'
    from RubyLoadHandler.java:39:in `handle'
    from Parser.java:300:in `addNode'
    from DefaultYAMLParser.java:676:in `yyparse'
    from Parser.java:290:in `yechtparse'
    from Parser.java:284:in `parse'
    from YParser.java:152:in `load'
    from org/yecht/ruby/YParser$s_method_0_1$RUBYINVOKER$load.gen:65535:in `call'
    from JavaMethod.java:630:in `call'
    from DynamicMethod.java:186:in `call'
    from CachingCallSite.java:309:in `cacheAndCall'
    from CachingCallSite.java:148:in `call'
    from CallOneArgNode.java:57:in `interpret'
    from LocalAsgnNode.java:123:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from InterpretedMethod.java:180:in `call'
    from DefaultMethod.java:174:in `call'
    from CachingCallSite.java:309:in `cacheAndCall'
    from CachingCallSite.java:148:in `call'
    from CallOneArgNode.java:57:in `interpret'
    from LocalAsgnNode.java:123:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from InterpretedMethod.java:180:in `call'
    from DefaultMethod.java:174:in `call'
    from CachingCallSite.java:309:in `cacheAndCall'
    from CachingCallSite.java:148:in `call'
    from CallOneArgNode.java:57:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from RescueNode.java:199:in `executeBody'
    from RescueNode.java:118:in `interpretWithJavaExceptions'
    from RescueNode.java:110:in `interpret'
    from InterpretedMethod.java:180:in `call'
    from DefaultMethod.java:174:in `call'
    from CachingCallSite.java:309:in `cacheAndCall'
    from CachingCallSite.java:148:in `call'
    from FCallOneArgNode.java:36:in `interpret'
    from InstAsgnNode.java:95:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from EnsureNode.java:96:in `interpret'
    from BeginNode.java:83:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from WhenOneArgNode.java:36:in `whenSlowTest'
    from WhenOneArgNode.java:46:in `when'
    from CaseNode.java:133:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from InterpretedBlock.java:373:in `evalBlockBody'
    from InterpretedBlock.java:346:in `yield'
    from InterpretedBlock.java:303:in `yield'
    from Block.java:194:in `yield'
    from YieldNode.java:112:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from InterpretedBlock.java:373:in `evalBlockBody'
    from InterpretedBlock.java:346:in `yield'
    from InterpretedBlock.java:303:in `yield'
    from Block.java:194:in `yield'
    from RubyKernel.java:1251:in `loop_1_9'
    from org/jruby/RubyKernel$s_method_0_0$RUBYFRAMEDINVOKER$loop_1_9.gen:65535:in `call'
    from CachingCallSite.java:299:in `cacheAndCall'
    from CachingCallSite.java:117:in `callBlock'
    from CachingCallSite.java:132:in `callIter'
    from FCallNoArgBlockNode.java:32:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from InterpretedMethod.java:160:in `call'
    from DefaultMethod.java:166:in `call'
    from CachingCallSite.java:299:in `cacheAndCall'
    from CachingCallSite.java:117:in `callBlock'
    from CachingCallSite.java:122:in `call'
    from CallNoArgBlockNode.java:64:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from InterpretedMethod.java:242:in `call'
    from DefaultMethod.java:198:in `call'
    from CachingCallSite.java:339:in `cacheAndCall'
    from CachingCallSite.java:197:in `callBlock'
    from CachingCallSite.java:202:in `call'
    from RubyClass.java:819:in `call'
    from DynamicMethod.java:194:in `call'
    from WrapperMethod.java:62:in `call'
    from CachingCallSite.java:329:in `cacheAndCall'
    from CachingCallSite.java:188:in `call'
    from FCallTwoArgNode.java:38:in `interpret'
    from LocalAsgnNode.java:123:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from EnsureNode.java:96:in `interpret'
    from InterpretedMethod.java:242:in `call'
    from DefaultMethod.java:198:in `call'
    from CachingCallSite.java:339:in `cacheAndCall'
    from CachingCallSite.java:197:in `callBlock'
    from CachingCallSite.java:202:in `call'
    from CallTwoArgBlockPassNode.java:62:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from InterpretedMethod.java:283:in `call'
    from DefaultMethod.java:214:in `call'
    from CachingCallSite.java:359:in `cacheAndCall'
    from CachingCallSite.java:237:in `callBlock'
    from CachingCallSite.java:252:in `callIter'
    from CallThreeArgBlockNode.java:64:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from InterpretedMethod.java:262:in `call'
    from DefaultMethod.java:206:in `call'
    from CachingCallSite.java:349:in `cacheAndCall'
    from CachingCallSite.java:228:in `call'
    from FCallThreeArgNode.java:40:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from InterpretedBlock.java:373:in `evalBlockBody'
    from InterpretedBlock.java:346:in `yield'
    from InterpretedBlock.java:303:in `yield'
    from Block.java:194:in `yield'
    from RubyIO.java:1106:in `open'
    from RubyKernel.java:283:in `open'
    from org/jruby/RubyKernel$s_method_0_2$RUBYFRAMEDINVOKER$open.gen:65535:in `call'
    from DynamicMethod.java:198:in `call'
    from CachingCallSite.java:339:in `cacheAndCall'
    from CachingCallSite.java:197:in `callBlock'
    from CachingCallSite.java:212:in `callIter'
    from FCallTwoArgBlockNode.java:34:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from IfNode.java:119:in `interpret'
    from IfNode.java:119:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from InterpretedMethod.java:221:in `call'
    from DefaultMethod.java:190:in `call'
    from CachingCallSite.java:329:in `cacheAndCall'
    from CachingCallSite.java:188:in `call'
    from CallTwoArgNode.java:59:in `interpret'
    from InstAsgnNode.java:95:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from RescueNode.java:199:in `executeBody'
    from RescueNode.java:118:in `interpretWithJavaExceptions'
    from RescueNode.java:110:in `interpret'
    from BeginNode.java:83:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from InterpretedMethod.java:242:in `call'
    from DefaultMethod.java:198:in `call'
    from CachingCallSite.java:339:in `cacheAndCall'
    from CachingCallSite.java:197:in `callBlock'
    from CachingCallSite.java:202:in `call'
    from RubyClass.java:819:in `call'
    from DynamicMethod.java:194:in `call'
    from CachingCallSite.java:329:in `cacheAndCall'
    from CachingCallSite.java:188:in `call'
    from CallTwoArgNode.java:59:in `interpret'
    from DAsgnNode.java:110:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from InterpretedBlock.java:373:in `evalBlockBody'
    from InterpretedBlock.java:346:in `yield'
    from InterpretedBlock.java:303:in `yield'
    from Block.java:194:in `yield'
    from RubyArray.java:1630:in `eachCommon'
    from RubyArray.java:1637:in `each'
    from org/jruby/RubyArray$i_method_0_0$RUBYFRAMEDINVOKER$each.gen:65535:in `call'
    from CachingCallSite.java:299:in `cacheAndCall'
    from CachingCallSite.java:117:in `callBlock'
    from CachingCallSite.java:122:in `call'
    from CallNoArgBlockNode.java:64:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from InterpretedMethod.java:221:in `call'
    from DefaultMethod.java:190:in `call'
    from CachingCallSite.java:329:in `cacheAndCall'
    from CachingCallSite.java:188:in `call'
    from CallTwoArgNode.java:59:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from RescueNode.java:199:in `executeBody'
    from RescueNode.java:118:in `interpretWithJavaExceptions'
    from RescueNode.java:110:in `interpret'
    from BeginNode.java:83:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from InterpretedBlock.java:373:in `evalBlockBody'
    from InterpretedBlock.java:346:in `yield'
    from InterpretedBlock.java:303:in `yield'
    from Block.java:194:in `yield'
    from RubyArray.java:1630:in `eachCommon'
    from RubyArray.java:1637:in `each'
    from org/jruby/RubyArray$i_method_0_0$RUBYFRAMEDINVOKER$each.gen:65535:in `call'
    from CachingCallSite.java:299:in `cacheAndCall'
    from CachingCallSite.java:117:in `callBlock'
    from CachingCallSite.java:122:in `call'
    from CallNoArgBlockNode.java:64:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from InterpretedMethod.java:139:in `call'
    from DefaultMethod.java:158:in `call'
    from CachingCallSite.java:289:in `cacheAndCall'
    from CachingCallSite.java:108:in `call'
    from VCallNode.java:85:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from IfNode.java:119:in `interpret'
    from IfNode.java:119:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from InterpretedMethod.java:180:in `call'
    from DefaultMethod.java:174:in `call'
    from CachingCallSite.java:309:in `cacheAndCall'
    from CachingCallSite.java:148:in `call'
    from CallSpecialArgNode.java:67:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from CaseNode.java:138:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from InterpretedMethod.java:180:in `call'
    from DefaultMethod.java:174:in `call'
    from CachingCallSite.java:309:in `cacheAndCall'
    from CachingCallSite.java:148:in `call'
    from FCallOneArgNode.java:36:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from RescueNode.java:199:in `executeBody'
    from RescueNode.java:118:in `interpretWithJavaExceptions'
    from RescueNode.java:110:in `interpret'
    from InterpretedMethod.java:180:in `call'
    from DefaultMethod.java:174:in `call'
    from CachingCallSite.java:309:in `cacheAndCall'
    from CachingCallSite.java:148:in `call'
    from CallOneArgNode.java:57:in `interpret'
    from NewlineNode.java:104:in `interpret'
    from BlockNode.java:71:in `interpret'
    from InterpretedMethod.java:180:in `call'
    from DefaultMethod.java:174:in `call'
    from CachingCallSite.java:309:in `cacheAndCall'
    from CachingCallSite.java:148:in `call'
    from gem:24:in `rescue_1$RUBY$__rescue___0'
    from gem:23:in `__file__'
    from gem:-1:in `load'
    from Ruby.java:692:in `runScript'
    from Ruby.java:575:in `runNormally'
    from Ruby.java:418:in `runFromMain'
    from Main.java:286:in `run'
    from Main.java:128:in `run'
    from Main.java:97:in `main'
@jeremybmerrill
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Hey @johnjohndoe: I suspect the issue is that your JRuby is old. Can you try 1.7.15? (I've run into weird issues on various platforms with 1.7.16 and 1.7.19, strangely.)

FWIW I do most of my Tabula development on 14.10, so Ubuntu is equally as supported as Mac (Windows is supported only begrudgingly!).

@johnjohndoe
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Yes, this works better. Thank you. There are some warnings when I run the tool:

SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
Mar 17, 2015 9:06:35 AM org.apache.pdfbox.util.PDFStreamEngine processOperator
INFO: unsupported/disabled operation: BDC
Mar 17, 2015 9:06:35 AM org.apache.pdfbox.util.PDFStreamEngine processOperator
INFO: unsupported/disabled operation: i
Mar 17, 2015 9:06:36 AM org.apache.pdfbox.util.PDFStreamEngine processOperator
INFO: unsupported/disabled operation: EMC

You might wanna add a .ruby-version file to the repository defining jruby-1.7.15.

@johnjohndoe johnjohndoe changed the title EOFException when installing EOFException when installing with jruby 1.5.6 Mar 17, 2015
@johnjohndoe johnjohndoe changed the title EOFException when installing with jruby 1.5.6 EOFException when installing with JRuby 1.5.6 Mar 17, 2015
@jeremybmerrill
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Hi @johnjohndoe: Good idea! I added a .ruby-version just now.

Those warnings should be disabled as of January, in 0f1eee0.

@johnjohndoe
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👍

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