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Nn interface #280

Merged
merged 16 commits into from
Jan 23, 2020
Merged

Nn interface #280

merged 16 commits into from
Jan 23, 2020

Commits on Jan 13, 2020

  1. Use trail length menu for showing/hiding trails.

    @ntabris
    ntabris committed Jan 13, 2020
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Commits on Jan 16, 2020

  1. Modularize data io into format adaptors. 

    All of the dataset formats (hdf5, json, coco, etc) are broken out
into separate format adaptor classes. Adaptors are registered
with a Dispatch object and then the Dispatch objects finds the
appropriate adaptor. The main entry points for most cases are
sleap.io.format.read and sleap.io.format.read.

Load/save in the Labels class are now wrappers for these functions.
    @ntabris
    ntabris committed Jan 16, 2020
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  2. Update frame load request delay from recent avg.

    @ntabris
    ntabris committed Jan 16, 2020
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  3. Bug fix, zoom to fit wasn't running for new frames

    @ntabris
    ntabris committed Jan 16, 2020
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Commits on Jan 17, 2020

  1. Add h5 file used in adaptor tests.

    @ntabris
    ntabris committed Jan 17, 2020
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  2. Slightly thicker track lines (1.5 -> 2)

    @ntabris
    ntabris committed Jan 17, 2020
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  3. Bug fix for changing track w/in selected range.

    @ntabris
    ntabris committed Jan 17, 2020
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  4. Merge branch 'io-adaptors' of https://github.com/murthylab/sleap into… 

    … nn-interface
    @ntabris
    ntabris committed Jan 17, 2020
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Commits on Jan 21, 2020

  1. Merge branch 'develop' of https://github.com/murthylab/sleap into nn-… 

    …interface
    @ntabris
    ntabris committed Jan 21, 2020
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Commits on Jan 22, 2020

  1. Merge branch 'develop' of https://github.com/murthylab/sleap into nn-… 

    …interface
    @ntabris
    ntabris committed Jan 22, 2020
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  2. Merge branch 'develop' of https://github.com/murthylab/sleap into nn-… 

    …interface
    @ntabris
    ntabris committed Jan 22, 2020
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  3. Add "dummy" option to VideoLoader. 

    Returns dummy frames if set; used when we don't need frame images
in the prediction pipeline.
    @ntabris
    ntabris committed Jan 22, 2020
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  4. Add tracking-only ui to sleap-track. 

    If sleap-track is given labels file as data_path and tracking
policy but no models, then it will run the tracker on the
previously generated predictions. This is a better interface
than having to call sleap.nn.tracking to retrack.

Resolves issue #260.
    @ntabris
    ntabris committed Jan 22, 2020
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Commits on Jan 23, 2020

  1. Add predicted_instances access to Labels class.

    @ntabris
    ntabris committed Jan 23, 2020
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  2. Merge branch 'develop' of https://github.com/murthylab/sleap into nn-… 

    …interface
    @ntabris
    ntabris committed Jan 23, 2020
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  3. Add back abspath() lost in merge.

    @ntabris
    ntabris committed Jan 23, 2020
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