Skip to content

Commit

Permalink
Create background.md
Browse files Browse the repository at this point in the history
  • Loading branch information
Steve Baskauf committed Jun 7, 2019
1 parent 79d4980 commit 8939ff0
Showing 1 changed file with 63 additions and 0 deletions.
63 changes: 63 additions & 0 deletions view/background.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,63 @@
# Background notes

Controlled vocabularies would provide values for *ac:subjectOrientation* (<http://rs.tdwg.org/ac/terms/subjectOrientation>) and *ac:subjectPart* (<http://rs.tdwg.org/ac/terms/subjectPart>).

## Relevant OBO Foundry ontologies

**[Biological Spatial Ontology](http://www.obofoundry.org/ontology/bspo.html)**

Relevant to subject orientation. Note in particular subclasses of [anatomical region](http://www.ontobee.org/ontology/BSPO?iri=http://purl.obolibrary.org/obo/BSPO_0000070)

**[Plant Ontology](http://www.obofoundry.org/ontology/po.html)**

Most relevant plant parts are probably subclasses of [plant structure](http://www.ontobee.org/ontology/PO?iri=http://purl.obolibrary.org/obo/PO_0009011), although the various plant structures are scattered among various subclasses.

**[Fungal gross anatomy](http://www.obofoundry.org/ontology/fao.html)**

[fungal structure](http://www.ontobee.org/ontology/FAO?iri=http://purl.obolibrary.org/obo/FAO_0000001)

**[Uberon multi-species anatomy ontology](http://www.obofoundry.org/ontology/uberon.html)**

An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies. Subclasses of [anatomical structure](http://www.ontobee.org/ontology/UBERON?iri=http://purl.obolibrary.org/obo/UBERON_0000061)??

**[Mouse gross anatomy and develpment, timed](http://www.obofoundry.org/ontology/emapa.html)**

Possible source for mammal body parts. See also [Mouse adult gross anatomy](http://www.obofoundry.org/ontology/ma.html)

**[Xenopus Phenotype Ontology](http://www.obofoundry.org/ontology/xpo.html)**

amphibians (frogs)

**[Zebrafish Phenotype Ontology](http://www.obofoundry.org/ontology/zp.html)**

fish

**[Drosophila gross anatomy](http://www.obofoundry.org/ontology/fbbt.html)

Possible source for insect body parts

**[Hymenoptera Anatomy Ontology](http://www.obofoundry.org/ontology/hao.html)**

Another source for insect body parts

**[Mosquito gross anatomy ontology](http://www.obofoundry.org/ontology/tgma.html)**

more insect body parts

**[Spider Ontology](http://www.obofoundry.org/ontology/spd.html)**

Spider anatomical parts and products (e.g. web)

**[Tick Anatomy Ontology](http://www.obofoundry.org/ontology/tads.html)**

Ixodidae and Argassidae families

**[C. elegans Gross Anatomy Ontology](http://www.obofoundry.org/ontology/wbbt.html)**

useful for worms?

**[Porifera Ontology](http://www.obofoundry.org/ontology/poro.html)

Sponges


0 comments on commit 8939ff0

Please sign in to comment.