VI noise. ch2 editing.

tfiers · Jul 10, 2023 · d2f2513 · d2f2513
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diff --git a/nb/2023-06-23__Vm_traces_AdEx_Izh__Brian.ipynb b/nb/2023-06-23__Vm_traces_AdEx_Izh__Brian.ipynb
diff --git a/nb/lib/plot.py b/nb/lib/plot.py
@@ -53,9 +53,11 @@ def reset_and_apply():
 
 reset_and_apply()
 
-
 from brian2 import *
 
+def savefig_(name):
+    savefig(f"../thesis/figs/{name}.pdf")
+
 def plotsig(y, label="", hylab=True, t_unit=ms, y_unit='auto', ax=None, **kw):
     t = timesig(y)
     if y_unit == 'auto':

diff --git a/thesis/ch2.tex b/thesis/ch2.tex
diff --git a/thesis/figs/VI_noise.pdf b/thesis/figs/VI_noise.pdf
diff --git a/thesis/figs/Vm_Izh_vs_AdEx.pdf b/thesis/figs/Vm_Izh_vs_AdEx.pdf
diff --git a/thesis/main.pdf b/thesis/main.pdf
diff --git a/thesis/main.tex b/thesis/main.tex
@@ -28,6 +28,7 @@
 \newunicodechar{σ}{\ensuremath{\sigma}}
 \newunicodechar{τ}{\ensuremath{\tau}}
 \newunicodechar{δ}{\ensuremath{\delta}}
+\newunicodechar{ε}{\ensuremath{\varepsilon}}
 % \newunicodechar{×}{\ensuremath{\times}}  % not needed (outside math)
 \newunicodechar{₁}{\ensuremath{_1}}
 \newunicodechar{₂}{\ensuremath{_2}}
@@ -210,4 +211,6 @@ \section{Future work}
     \item New connection test method to try: something deep learning-based (we have infinite training data, given our simulation)
 \end{itemize}
 
+\References
+
 \end{document}
diff --git a/thesis/references.bib b/thesis/references.bib
@@ -19,6 +19,18 @@ @article{Brette2005AdaptiveExponentialIntegrateandFirea
   url = {https://journals.physiology.org/doi/full/10.1152/jn.00686.2005}
 }
 
+@article{Brette2007SimulationNetworksSpiking,
+  title = {Simulation of Networks of Spiking Neurons: {{A}} Review of Tools and Strategies},
+  shorttitle = {Simulation of Networks of Spiking Neurons},
+  author = {Brette, Romain and Rudolph, Michelle and Carnevale, Ted and Hines, Michael and Beeman, David and Bower, James M. and Diesmann, Markus and Morrison, Abigail and Goodman, Philip H. and Harris, Frederick C. and Zirpe, Milind and Natschläger, Thomas and Pecevski, Dejan and Ermentrout, Bard and Djurfeldt, Mikael and Lansner, Anders and Rochel, Olivier and Vieville, Thierry and Muller, Eilif and Davison, Andrew P. and El Boustani, Sami and Destexhe, Alain},
+  date = {2007-12-01},
+  journaltitle = {Journal of Computational Neuroscience},
+  shortjournal = {J Comput Neurosci},
+  doi = {10.1007/s10827-007-0038-6},
+  url = {https://doi.org/10.1007/s10827-007-0038-6},
+  langid = {english}
+}
+
 @book{Dayan2001TheoreticalNeuroscienceComputational,
   title = {Theoretical Neuroscience: Computational and Mathematical Modeling of Neural Systems},
   shorttitle = {Theoretical Neuroscience},