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Support float histogram in store gateway #6925

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merged 5 commits into from Nov 27, 2023
Merged

Support float histogram in store gateway #6925

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554c16e
support float histogram in store gateway
yeya24 Nov 26, 2023
da6b93d
fix lint
yeya24 Nov 26, 2023
062749e
fix e2e test
yeya24 Nov 26, 2023
727d92e
update prompb
yeya24 Nov 26, 2023
5aad14f
add changelog
yeya24 Nov 26, 2023
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2 changes: 1 addition & 1 deletion pkg/store/bucket.go
View file
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Expand Up @@ -1251,7 +1251,7 @@ func populateChunk(out *storepb.AggrChunk, in chunkenc.Chunk, aggrs []storepb.Ag
hasher := hashPool.Get().(hash.Hash64)
defer hashPool.Put(hasher)

if in.Encoding() == chunkenc.EncXOR || in.Encoding() == chunkenc.EncHistogram {
if in.Encoding() == chunkenc.EncXOR || in.Encoding() == chunkenc.EncHistogram || in.Encoding() == chunkenc.EncFloatHistogram {
b, err := save(in.Bytes())
if err != nil {
return err
Expand Down
7 changes: 7 additions & 0 deletions pkg/store/bucket_test.go
View file
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Expand Up @@ -1301,6 +1301,13 @@ func TestBucketHistogramSeries(t *testing.T) {
})
}

func TestBucketFloatHistogramSeries(t *testing.T) {
tb := testutil.NewTB(t)
storetestutil.RunSeriesInterestingCases(tb, 200e3, 200e3, func(t testutil.TB, samplesPerSeries, series int) {
benchBucketSeries(t, chunkenc.ValFloatHistogram, false, false, samplesPerSeries, series, 1)
})
}

func TestBucketSkipChunksSeries(t *testing.T) {
tb := testutil.NewTB(t)
storetestutil.RunSeriesInterestingCases(tb, 200e3, 200e3, func(t testutil.TB, samplesPerSeries, series int) {
Expand Down
35 changes: 35 additions & 0 deletions pkg/store/storepb/testutil/series.go
View file
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Expand Up @@ -120,6 +120,8 @@ func CreateHeadWithSeries(t testing.TB, j int, opts HeadGenOptions) (*tsdb.Head,
appendFloatSamples(t, app, tsLabel, opts)
case chunkenc.ValHistogram:
appendHistogramSamples(t, app, tsLabel, opts)
case chunkenc.ValFloatHistogram:
appendFloatHistogramSamples(t, app, tsLabel, opts)
}
}
testutil.Ok(t, app.Commit())
Expand Down Expand Up @@ -222,6 +224,39 @@ func appendHistogramSamples(t testing.TB, app storage.Appender, tsLabel int, opt
}
}

func appendFloatHistogramSamples(t testing.TB, app storage.Appender, tsLabel int, opts HeadGenOptions) {
sample := &histogram.FloatHistogram{
ZeroThreshold: 0.01,
ZeroCount: 5.5,
Count: 15,
Sum: 11.5,
PositiveSpans: []histogram.Span{
{Offset: -2, Length: 2},
{Offset: 1, Length: 3},
},
PositiveBuckets: []float64{0.5, 0, 1.5, 2, 3.5},
NegativeSpans: []histogram.Span{
{Offset: 3, Length: 2},
{Offset: 3, Length: 2},
},
NegativeBuckets: []float64{1.5, 0.5, 2.5, 3},
}

ref, err := app.AppendHistogram(
0,
labels.FromStrings("foo", "bar", "i", fmt.Sprintf("%07d%s", tsLabel, LabelLongSuffix), "j", fmt.Sprintf("%v", tsLabel)),
int64(tsLabel)*opts.ScrapeInterval.Milliseconds(),
nil,
sample,
)
testutil.Ok(t, err)

for is := 1; is < opts.SamplesPerSeries; is++ {
_, err := app.AppendHistogram(ref, labels.EmptyLabels(), int64(tsLabel+is)*opts.ScrapeInterval.Milliseconds(), nil, sample)
testutil.Ok(t, err)
}
}

// SeriesServer is test gRPC storeAPI series server.
type SeriesServer struct {
// This field just exist to pseudo-implement the unused methods of the interface.
Expand Down
61 changes: 49 additions & 12 deletions pkg/testutil/e2eutil/prometheus.go
View file
Open in desktop
Expand Up @@ -57,18 +57,37 @@ const (
PromAddrPlaceHolder = "PROMETHEUS_ADDRESS"
)

var histogramSample = histogram.Histogram{
Schema: 0,
Count: 20,
Sum: -3.1415,
ZeroCount: 12,
ZeroThreshold: 0.001,
NegativeSpans: []histogram.Span{
{Offset: 0, Length: 4},
{Offset: 1, Length: 1},
},
NegativeBuckets: []int64{1, 2, -2, 1, -1},
}
var (
histogramSample = histogram.Histogram{
Schema: 0,
Count: 20,
Sum: -3.1415,
ZeroCount: 12,
ZeroThreshold: 0.001,
NegativeSpans: []histogram.Span{
{Offset: 0, Length: 4},
{Offset: 1, Length: 1},
},
NegativeBuckets: []int64{1, 2, -2, 1, -1},
}

floatHistogramSample = histogram.FloatHistogram{
ZeroThreshold: 0.01,
ZeroCount: 5.5,
Count: 15,
Sum: 11.5,
PositiveSpans: []histogram.Span{
{Offset: -2, Length: 2},
{Offset: 1, Length: 3},
},
PositiveBuckets: []float64{0.5, 0, 1.5, 2, 3.5},
NegativeSpans: []histogram.Span{
{Offset: 3, Length: 2},
{Offset: 3, Length: 2},
},
NegativeBuckets: []float64{1.5, 0.5, 2.5, 3},
}
)

func PrometheusBinary() string {
return "prometheus-" + defaultPrometheusVersion
Expand Down Expand Up @@ -463,6 +482,22 @@ func CreateHistogramBlockWithDelay(
return createBlockWithDelay(ctx, dir, series, numSamples, mint, maxt, blockDelay, extLset, resolution, hashFunc, chunkenc.ValHistogram)
}

// CreateFloatHistogramBlockWithDelay writes a block with the given float native histogram series and numSamples samples each.
// Samples will be in the time range [mint, maxt).
func CreateFloatHistogramBlockWithDelay(
ctx context.Context,
dir string,
series []labels.Labels,
numSamples int,
mint, maxt int64,
blockDelay time.Duration,
extLset labels.Labels,
resolution int64,
hashFunc metadata.HashFunc,
) (id ulid.ULID, err error) {
return createBlockWithDelay(ctx, dir, series, numSamples, mint, maxt, blockDelay, extLset, resolution, hashFunc, chunkenc.ValFloatHistogram)
}

func createBlockWithDelay(ctx context.Context, dir string, series []labels.Labels, numSamples int, mint int64, maxt int64, blockDelay time.Duration, extLset labels.Labels, resolution int64, hashFunc metadata.HashFunc, samplesType chunkenc.ValueType) (ulid.ULID, error) {
blockID, err := createBlock(ctx, dir, series, numSamples, mint, maxt, extLset, resolution, false, hashFunc, samplesType)
if err != nil {
Expand Down Expand Up @@ -545,6 +580,8 @@ func createBlock(
randMutex.Unlock()
} else if sampleType == chunkenc.ValHistogram {
_, err = app.AppendHistogram(0, lset, t, &histogramSample, nil)
} else if sampleType == chunkenc.ValFloatHistogram {
_, err = app.AppendHistogram(0, lset, t, nil, &floatHistogramSample)
}
if err != nil {
if rerr := app.Rollback(); rerr != nil {
Expand Down
100 changes: 70 additions & 30 deletions test/e2e/store_gateway_test.go
View file
Open in desktop
Expand Up @@ -96,11 +96,13 @@ metafile_content_ttl: 0s`, memcached.InternalEndpoint("memcached"))

floatSeries := []labels.Labels{labels.FromStrings("a", "1", "b", "2")}
nativeHistogramSeries := []labels.Labels{labels.FromStrings("a", "1", "b", "3")}
floatHistogramSeries := []labels.Labels{labels.FromStrings("a", "1", "b", "4")}
extLset := labels.FromStrings("ext1", "value1", "replica", "1")
extLset2 := labels.FromStrings("ext1", "value1", "replica", "2")
extLset3 := labels.FromStrings("ext1", "value2", "replica", "3")
extLset4 := labels.FromStrings("ext1", "value1", "replica", "3")
extLset5 := labels.FromStrings("ext1", "value3", "replica", "1")
extLset6 := labels.FromStrings("ext1", "value3", "replica", "2")

ctx, cancel := context.WithTimeout(context.Background(), 2*time.Minute)
t.Cleanup(cancel)
Expand All @@ -116,6 +118,8 @@ metafile_content_ttl: 0s`, memcached.InternalEndpoint("memcached"))
testutil.Ok(t, err)
id5, err := e2eutil.CreateHistogramBlockWithDelay(ctx, dir, nativeHistogramSeries, 10, timestamp.FromTime(now), timestamp.FromTime(now.Add(2*time.Hour)), 30*time.Minute, extLset5, 0, metadata.NoneFunc)
testutil.Ok(t, err)
id6, err := e2eutil.CreateFloatHistogramBlockWithDelay(ctx, dir, floatHistogramSeries, 10, timestamp.FromTime(now), timestamp.FromTime(now.Add(2*time.Hour)), 30*time.Minute, extLset6, 0, metadata.NoneFunc)
testutil.Ok(t, err)
l := log.NewLogfmtLogger(os.Stdout)
bkt, err := s3.NewBucketWithConfig(l,
e2ethanos.NewS3Config(bucket, m.Endpoint("http"), m.Dir()), "test-feed")
Expand All @@ -126,13 +130,14 @@ metafile_content_ttl: 0s`, memcached.InternalEndpoint("memcached"))
testutil.Ok(t, objstore.UploadDir(ctx, l, bkt, path.Join(dir, id3.String()), id3.String()))
testutil.Ok(t, objstore.UploadDir(ctx, l, bkt, path.Join(dir, id4.String()), id4.String()))
testutil.Ok(t, objstore.UploadDir(ctx, l, bkt, path.Join(dir, id5.String()), id5.String()))
testutil.Ok(t, objstore.UploadDir(ctx, l, bkt, path.Join(dir, id6.String()), id6.String()))

// Wait for store to sync blocks.
// thanos_blocks_meta_synced: 2x loadedMeta 1x labelExcludedMeta 1x TooFreshMeta.
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(5), "thanos_blocks_meta_synced"))
// thanos_blocks_meta_synced: 4x loadedMeta 1x labelExcludedMeta 1x TooFreshMeta.
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(6), "thanos_blocks_meta_synced"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(0), "thanos_blocks_meta_sync_failures_total"))

testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(3), "thanos_bucket_store_blocks_loaded"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(4), "thanos_bucket_store_blocks_loaded"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(0), "thanos_bucket_store_block_drops_total"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(0), "thanos_bucket_store_block_load_failures_total"))

Expand Down Expand Up @@ -161,23 +166,29 @@ metafile_content_ttl: 0s`, memcached.InternalEndpoint("memcached"))
"ext1": "value3",
"replica": "1",
},
{
"a": "1",
"b": "4",
"ext1": "value3",
"replica": "2",
},
},
)

// 2 x postings, 3 x series, 2 x chunks.
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(9), "thanos_bucket_store_series_data_touched"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(9), "thanos_bucket_store_series_data_fetched"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(3), "thanos_bucket_store_series_blocks_queried"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(12), "thanos_bucket_store_series_data_touched"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(12), "thanos_bucket_store_series_data_fetched"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(4), "thanos_bucket_store_series_blocks_queried"))

tenant1Opts := []e2emon.MetricsOption{
e2emon.WithLabelMatchers(matchers.MustNewMatcher(matchers.MatchEqual, tenancy.MetricLabel, "test-tenant-1")),
e2emon.WaitMissingMetrics(),
}

// Test per tenant store metrics
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(9), []string{"thanos_bucket_store_series_data_touched"}, tenant1Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(9), []string{"thanos_bucket_store_series_data_fetched"}, tenant1Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(3), []string{"thanos_bucket_store_series_blocks_queried"}, tenant1Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(12), []string{"thanos_bucket_store_series_data_touched"}, tenant1Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(12), []string{"thanos_bucket_store_series_data_fetched"}, tenant1Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(4), []string{"thanos_bucket_store_series_blocks_queried"}, tenant1Opts...))

queryAndAssertSeries(t, ctx, q.Endpoint("http"), func() string { return testQuery },
time.Now, promclient.QueryOptions{
Expand All @@ -195,37 +206,42 @@ metafile_content_ttl: 0s`, memcached.InternalEndpoint("memcached"))
"b": "3",
"ext1": "value3",
},
{
"a": "1",
"b": "4",
"ext1": "value3",
},
},
)

tenant2Opts := []e2emon.MetricsOption{
e2emon.WithLabelMatchers(matchers.MustNewMatcher(matchers.MatchEqual, tenancy.MetricLabel, "test-tenant-2")),
e2emon.WaitMissingMetrics(),
}
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(18), "thanos_bucket_store_series_data_touched"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(12), "thanos_bucket_store_series_data_fetched"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(3+3), "thanos_bucket_store_series_blocks_queried"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(24), "thanos_bucket_store_series_data_touched"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(16), "thanos_bucket_store_series_data_fetched"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(4+4), "thanos_bucket_store_series_blocks_queried"))

// Test tenant some tenant specific store metrics
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(9), []string{"thanos_bucket_store_series_data_touched"}, tenant2Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(3), []string{"thanos_bucket_store_series_data_fetched"}, tenant2Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(3), []string{"thanos_bucket_store_series_blocks_queried"}, tenant2Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(12), []string{"thanos_bucket_store_series_data_touched"}, tenant2Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(4), []string{"thanos_bucket_store_series_data_fetched"}, tenant2Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(4), []string{"thanos_bucket_store_series_blocks_queried"}, tenant2Opts...))

// the first tenants metrics should be unaffected by the additional query
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(9), []string{"thanos_bucket_store_series_data_touched"}, tenant1Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(9), []string{"thanos_bucket_store_series_data_fetched"}, tenant1Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(3), []string{"thanos_bucket_store_series_blocks_queried"}, tenant1Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(12), []string{"thanos_bucket_store_series_data_touched"}, tenant1Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(12), []string{"thanos_bucket_store_series_data_fetched"}, tenant1Opts...))
testutil.Ok(t, s1.WaitSumMetricsWithOptions(e2emon.Equals(4), []string{"thanos_bucket_store_series_blocks_queried"}, tenant1Opts...))

})
t.Run("remove meta.json from id1 block", func(t *testing.T) {
testutil.Ok(t, bkt.Delete(ctx, filepath.Join(id1.String(), block.MetaFilename)))

// Wait for store to sync blocks.
// thanos_blocks_meta_synced: 1x loadedMeta 1x labelExcludedMeta 1x TooFreshMeta 1x noMeta.
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(5), "thanos_blocks_meta_synced"))
// thanos_blocks_meta_synced: 3x loadedMeta 1x labelExcludedMeta 1x TooFreshMeta 1x noMeta.
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(6), "thanos_blocks_meta_synced"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(0), "thanos_blocks_meta_sync_failures_total"))

testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(2), "thanos_bucket_store_blocks_loaded"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(3), "thanos_bucket_store_blocks_loaded"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(1), "thanos_bucket_store_block_drops_total"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(0), "thanos_bucket_store_block_load_failures_total"))

Expand All @@ -247,21 +263,27 @@ metafile_content_ttl: 0s`, memcached.InternalEndpoint("memcached"))
"ext1": "value3",
"replica": "1",
},
{
"a": "1",
"b": "4",
"ext1": "value3",
"replica": "2",
},
},
)
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(4+4), "thanos_bucket_store_series_blocks_queried"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(8+3), "thanos_bucket_store_series_blocks_queried"))
})
t.Run("upload block id5, similar to id1", func(t *testing.T) {
id5, err := e2eutil.CreateBlockWithBlockDelay(ctx, dir, floatSeries, 10, timestamp.FromTime(now), timestamp.FromTime(now.Add(2*time.Hour)), 30*time.Minute, extLset4, 0, metadata.NoneFunc)
testutil.Ok(t, err)
testutil.Ok(t, objstore.UploadDir(ctx, l, bkt, path.Join(dir, id5.String()), id5.String()))

// Wait for store to sync blocks.
// thanos_blocks_meta_synced: 2x loadedMeta 1x labelExcludedMeta 1x TooFreshMeta 1x noMeta.
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(5), "thanos_blocks_meta_synced"))
// thanos_blocks_meta_synced: 4x loadedMeta 1x labelExcludedMeta 1x TooFreshMeta 1x noMeta.
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(7), "thanos_blocks_meta_synced"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(0), "thanos_blocks_meta_sync_failures_total"))

testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(2), "thanos_bucket_store_blocks_loaded"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(4), "thanos_bucket_store_blocks_loaded"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(1), "thanos_bucket_store_block_drops_total"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(0), "thanos_bucket_store_block_load_failures_total"))

Expand All @@ -288,19 +310,25 @@ metafile_content_ttl: 0s`, memcached.InternalEndpoint("memcached"))
"ext1": "value3",
"replica": "1",
},
{
"a": "1",
"b": "4",
"ext1": "value3",
"replica": "2",
},
},
)
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(11+2), "thanos_bucket_store_series_blocks_queried"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(11+4), "thanos_bucket_store_series_blocks_queried"))
})
t.Run("delete whole id2 block #yolo", func(t *testing.T) {
testutil.Ok(t, block.Delete(ctx, l, bkt, id2))

// Wait for store to sync blocks.
// thanos_blocks_meta_synced: 1x loadedMeta 1x labelExcludedMeta 1x TooFreshMeta 1x noMeta.
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(5), "thanos_blocks_meta_synced"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(6), "thanos_blocks_meta_synced"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(0), "thanos_blocks_meta_sync_failures_total"))

testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(2), "thanos_bucket_store_blocks_loaded"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(3), "thanos_bucket_store_blocks_loaded"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(1+1), "thanos_bucket_store_block_drops_total"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(0), "thanos_bucket_store_block_load_failures_total"))

Expand All @@ -321,9 +349,15 @@ metafile_content_ttl: 0s`, memcached.InternalEndpoint("memcached"))
"ext1": "value3",
"replica": "1",
},
{
"a": "1",
"b": "4",
"ext1": "value3",
"replica": "2",
},
},
)
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(14+1), "thanos_bucket_store_series_blocks_queried"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(15+3), "thanos_bucket_store_series_blocks_queried"))
})

t.Run("negative offset should work", func(t *testing.T) {
Expand All @@ -344,9 +378,15 @@ metafile_content_ttl: 0s`, memcached.InternalEndpoint("memcached"))
"ext1": "value3",
"replica": "1",
},
{
"a": "1",
"b": "4",
"ext1": "value3",
"replica": "2",
},
},
)
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(15+2), "thanos_bucket_store_series_blocks_queried"))
testutil.Ok(t, s1.WaitSumMetrics(e2emon.Equals(18+3), "thanos_bucket_store_series_blocks_queried"))
})

// TODO(khyati) Let's add some case for compaction-meta.json once the PR will be merged: https://github.com/thanos-io/thanos/pull/2136.
Expand Down