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I see the following as an output of daligner/LAshow:
1 2 n [ 1..8,696> x < 0..8,990> ~ 23.00% (8,990 x 8,696 bps,2,034 diffs, 87 trace pts)
2 1 n < 0..8,990> x [ 1..8,696> ~ 23.00% (8,696 x 8,990 bps,2,034 diffs, 90 trace pts)
I wonder if this worked as intended. I thought daligner would try to extend alignments to the end of a read (in this case both) if it was close to an end, even if that meant lowering the score by that extension.
Best,
German
The text was updated successfully, but these errors were encountered:
On 10/20/17, 12:48 PM, German Tischler wrote:
Hello Gene,
I see the following as an output of daligner/LAshow:
1 2 n [ 1..8,696> x < 0..8,990> ~ 23.00% (8,990 x 8,696 bps,2,034
diffs, 87 trace pts)
2 1 n < 0..8,990> x [ 1..8,696> ~ 23.00% (8,696 x 8,990 bps,2,034
diffs, 90 trace pts)
I wonder if this worked as intended. I thought daligner would try to
extend alignments to the end of a read (in this case both) if it was
close to an end, even if that meant lowering the score by that extension.
Best,
German
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Hello Gene,
I see the following as an output of daligner/LAshow:
1 2 n [ 1..8,696> x < 0..8,990> ~ 23.00% (8,990 x 8,696 bps,2,034 diffs, 87 trace pts)
2 1 n < 0..8,990> x [ 1..8,696> ~ 23.00% (8,696 x 8,990 bps,2,034 diffs, 90 trace pts)
I wonder if this worked as intended. I thought daligner would try to extend alignments to the end of a read (in this case both) if it was close to an end, even if that meant lowering the score by that extension.
Best,
German
The text was updated successfully, but these errors were encountered: