Your platform configuration file has to have the rnaseq_annotation.params name.
The content of the params file is the same as for other HD data types.
For format of the platform data file see chromosomal_region.md
Your must have rnaseq.params file. For possible parameter see hd-params.md.
Below is the expected file format for RNASeq data input files.
First column always has to be region name. The rest of the columns are recognised by the name, not by position.
Replace <sample_code> with an actual sample code (e.g. CACO2).
| Column Name | Description |
|---|---|
| REGION_NAME | Mandatory The name of this region. Often it's a gene name. e.g. WASH7P |
<sample_code>.readcount |
Mandatory Actual measurement. |
<sample_code>.normalizedreadcount |
Optional Normalized readcount. (e.g. RPKM) |
<sample_code>.zscore |
Optional Z-Score |