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thehyve · Jul 3, 2014 · 5cadbc9 · 5cadbc9
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diff --git a/TransmartCoreGrailsPlugin.groovy b/TransmartCoreGrailsPlugin.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 import org.springframework.stereotype.Component
 import org.transmartproject.db.accesscontrol.AccessControlChecks
 import org.transmartproject.db.dataquery.clinical.variables.ClinicalVariableFactory

diff --git a/...-app/controllers/org/transmartproject/db/ontology/http/BusinessExceptionController.groovy b/...-app/controllers/org/transmartproject/db/ontology/http/BusinessExceptionController.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.ontology.http
 
 import grails.converters.JSON

diff --git a/grails-app/domain/org/transmartproject/db/accesscontrol/AccessLevel.groovy b/grails-app/domain/org/transmartproject/db/accesscontrol/AccessLevel.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.accesscontrol
 
 import com.google.common.collect.ImmutableMultimap

diff --git a/grails-app/domain/org/transmartproject/db/accesscontrol/SecuredObject.groovy b/grails-app/domain/org/transmartproject/db/accesscontrol/SecuredObject.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.accesscontrol
 
 class SecuredObject {

diff --git a/grails-app/domain/org/transmartproject/db/accesscontrol/SecuredObjectAccess.groovy b/grails-app/domain/org/transmartproject/db/accesscontrol/SecuredObjectAccess.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.accesscontrol
 
 import org.transmartproject.db.user.PrincipalCoreDb

diff --git a/grails-app/domain/org/transmartproject/db/accesscontrol/SecuredObjectAccessView.groovy b/grails-app/domain/org/transmartproject/db/accesscontrol/SecuredObjectAccessView.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.accesscontrol
 
 import groovy.transform.EqualsAndHashCode

diff --git a/grails-app/domain/org/transmartproject/db/bioassay/BioAssayDataAnnotationCoreDb.groovy b/grails-app/domain/org/transmartproject/db/bioassay/BioAssayDataAnnotationCoreDb.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.bioassay
 
 import groovy.transform.EqualsAndHashCode

diff --git a/grails-app/domain/org/transmartproject/db/bioassay/BioAssayFeatureGroupCoreDb.groovy b/grails-app/domain/org/transmartproject/db/bioassay/BioAssayFeatureGroupCoreDb.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.bioassay
 
 import org.transmartproject.db.biomarker.BioMarkerCoreDb

diff --git a/grails-app/domain/org/transmartproject/db/biomarker/BioDataCorrelDescr.groovy b/grails-app/domain/org/transmartproject/db/biomarker/BioDataCorrelDescr.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.biomarker
 
 class BioDataCorrelDescr {

diff --git a/grails-app/domain/org/transmartproject/db/biomarker/BioDataCorrelationCoreDb.groovy b/grails-app/domain/org/transmartproject/db/biomarker/BioDataCorrelationCoreDb.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.biomarker
 
 class BioDataCorrelationCoreDb {

diff --git a/grails-app/domain/org/transmartproject/db/biomarker/BioMarkerCoreDb.groovy b/grails-app/domain/org/transmartproject/db/biomarker/BioMarkerCoreDb.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.biomarker
 
 class BioMarkerCoreDb {

diff --git a/grails-app/domain/org/transmartproject/db/biomarker/BioMarkerCorrelMv.groovy b/grails-app/domain/org/transmartproject/db/biomarker/BioMarkerCorrelMv.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.biomarker
 
 import groovy.transform.EqualsAndHashCode

diff --git a/grails-app/domain/org/transmartproject/db/dataquery/highdim/DeGplInfo.groovy b/grails-app/domain/org/transmartproject/db/dataquery/highdim/DeGplInfo.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.dataquery.highdim
 
 import org.hibernate.cfg.NotYetImplementedException

diff --git a/grails-app/domain/org/transmartproject/db/dataquery/highdim/DeSubjectSampleMapping.groovy b/grails-app/domain/org/transmartproject/db/dataquery/highdim/DeSubjectSampleMapping.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.dataquery.highdim
 
 import org.transmartproject.core.dataquery.assay.Assay

diff --git a/grails-app/domain/org/transmartproject/db/dataquery/highdim/acgh/DeSubjectAcghData.groovy b/grails-app/domain/org/transmartproject/db/dataquery/highdim/acgh/DeSubjectAcghData.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.dataquery.highdim.acgh
 
 import groovy.transform.EqualsAndHashCode

diff --git a/.../domain/org/transmartproject/db/dataquery/highdim/chromoregion/DeChromosomalRegion.groovy b/.../domain/org/transmartproject/db/dataquery/highdim/chromoregion/DeChromosomalRegion.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.dataquery.highdim.chromoregion
 
 import org.transmartproject.core.dataquery.highdim.chromoregion.Region

diff --git a/...domain/org/transmartproject/db/dataquery/highdim/metabolite/DeMetaboliteAnnotation.groovy b/...domain/org/transmartproject/db/dataquery/highdim/metabolite/DeMetaboliteAnnotation.groovy
@@ -1,3 +1,22 @@
+/*
+ * Copyright © 2013-2014 The Hyve B.V.
+ *
+ * This file is part of transmart-core-db.
+ *
+ * Transmart-core-db is free software: you can redistribute it and/or modify it
+ * under the terms of the GNU General Public License as published by the Free
+ * Software Foundation, either version 3 of the License, or (at your option) any
+ * later version.
+ *
+ * This program is distributed in the hope that it will be useful, but WITHOUT
+ * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * transmart-core-db.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 package org.transmartproject.db.dataquery.highdim.metabolite
 
 import org.transmartproject.db.dataquery.highdim.DeGplInfo