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setup.py
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setup.py
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# -*- coding: utf-8 -*-
import os
from pathlib import Path
from setuptools import setup, find_packages
try:
from cellrank import __email__, __author__, __version__, __maintainer__
except ImportError:
__author__ = "Marius Lange, Michal Klein, Juan Luis Restrepo Lopez"
__maintainer__ = "Marius Lange, Michal Klein"
__email__ = "info@cellrank.org"
__version__ = "1.0.0-rc.9"
if __name__ == "__main__":
setup(
name="cellrank",
use_scm_version=True,
setup_requires=["setuptools_scm"],
author=__author__,
author_email=__email__,
email=__email__,
maintainer=__maintainer__,
maintainer_email=__email__,
version=__version__,
description=Path("README.rst").read_text("utf-8").split("\n")[3],
long_description=Path("README.rst").read_text("utf-8"),
url="https://github.com/theislab/cellrank",
project_urls={
"Documentation": "https://cellrank.readthedocs.io/en/latest",
"Source Code": "https://github.com/theislab/cellrank",
},
download_url="https://github.com/theislab/cellrank",
license="BSD",
install_requires=list(
map(
str.strip,
open(os.path.abspath("requirements.txt"), "r").read().splitlines(),
)
),
extras_require=dict(
krylov=[
"mpi4py>=3.0.3",
"petsc>=3.13.0",
"slepc>=3.13.0",
"petsc4py>=3.13.0",
"slepc4py>=3.13.0",
],
test=[
"pytest>=4.4",
"pytest-mock>=3.1.0",
"pytest-parallel>=0.1.0",
"Pillow",
"mock>=4.0.2",
"python-igraph",
"louvain==0.6.1",
],
docs=[
r
for r in map(
str.strip,
open(os.path.abspath("docs/requirements.txt"), "r")
.read()
.splitlines(),
)
if "requirements.txt" not in r
],
dev=["pre-commit>=2.7.1"],
),
zip_safe=False,
packages=find_packages(),
python_required=">=3.6",
platforms=["Linux", "MacOs", "Windows"],
keywords=[
"bio-informatics",
"single-cell",
"RNA velocity",
"Markov chain",
"GPCCA",
],
classifiers=[
"Development Status :: 4 - Beta",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"Natural Language :: English",
"Framework :: Jupyter",
"Operating System :: MacOS :: MacOS X",
"Operating System :: Microsoft :: Windows",
"Operating System :: POSIX :: Linux",
"Typing :: Typed",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Scientific/Engineering :: Visualization",
],
)