Colab error when running setup_anndata()

[znavidi]

Hi,

When I run the CPA colab tutorial, in the following line:

cpa.CPA.setup_anndata(adata,
perturbation_keys={
'perturbation': 'condition',
'dosage': 'dose_val',
},
categorical_covariate_keys=['cell_type'],
control_key='control',
)

the below error occures in both tutorial:

TypeError: CategoricalDataFrameField.init() got an unexpected keyword argument 'obs_key'

I would appreciate any help to be able to run it.

[M0hammadL]

Hi Zeinab, thanks for your interest; we are updating the code and adding new tutorials. Hopefully, we will have the next update by the end of the week or early next week.

[znavidi]

Thanks a lot for your prompt reply! Looking forward to it!

[sumeer1]

@M0hammadL Hi,

Is there any update on this? I am getting the same error.