--transpose/-t option

[radio1988]

In the description it says:

 input                 Input is raw count data in TSV/CSV or H5AD (anndata)
                        format. Row/col names are mandatory. Note that TSV/CSV
                        files must be in gene x cell layout where rows are
                        genes and cols are cells (scRNA-seq convention).Use
                        the -t/--transpose option if your count matrix in cell
                        x gene layout. H5AD files must be in cell x gene
                        format (stats and scanpy convention).

  -t, --transpose       Transpose input matrix (default: False)

my csv files are in cellxgene format

I used code:
dca -t input.csv out_name
But in the log file, I found that dca still treated gene as cell and cell as genes

Am I doing sth wrong? thanks!

[gokceneraslan]

There was a bug, it's now fixed with (dfee679). Thanks for reporting!