You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I changed the Tensorflow version to 1.15. However, it looks like the version of pandas that DCA uses is also the older one. The model was trained and the output files mean.tsv, latenet.tsv were produced, following which the execution terminated with an error that pandas series has no attribute 'reshape'.
...
Use tf.where in 2.0, which has the same broadcast rule as np.where
WARNING:tensorflow:From /usr/local/lib/python3.6/dist-packages/keras/backend/tensorflow_backend.py:422: The name tf.global_variables is deprecated. Please use tf.compat.v1.global_variables instead.
2020-06-06 17:12:58,635 [WARNING] From /usr/local/lib/python3.6/dist-packages/keras/backend/tensorflow_backend.py:422: The name tf.global_variables is deprecated. Please use tf.compat.v1.global_variables instead.
2020-06-06 17:12:59.027542: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcublas.so.10
Traceback (most recent call last):
File "/usr/local/bin/dca", line 8, in <module>
sys.exit(main())
File "/usr/local/lib/python3.6/dist-packages/dca/__main__.py", line 149, in main
train.train_with_args(args)
File "/usr/local/lib/python3.6/dist-packages/dca/train.py", line 174, in train_with_args
net.write(adata, args.outputdir, mode='full', colnames=predict_columns)
File "/usr/local/lib/python3.6/dist-packages/dca/network.py", line 543, in write
write_text_matrix(adata.var['X_dca_dispersion'].reshape(1, -1),
File "/usr/local/lib/python3.6/dist-packages/pandas/core/generic.py", line 5274, in __getattr__
return object.__getattribute__(self, name)
AttributeError: 'Series' object has no attribute 'reshape'
In the newer versions of pandas, it is replaced with pandas.Series.values.reshape. Is there any way to fix this without changing the version?
The text was updated successfully, but these errors were encountered:
I ran the following command on my dataset.
dca SRA779509_SRS3805247.tsv DCA --type zinb
I changed the Tensorflow version to 1.15. However, it looks like the version of
pandas
that DCA uses is also the older one. The model was trained and the output filesmean.tsv
,latenet.tsv
were produced, following which the execution terminated with an error that pandas series has no attribute 'reshape'.In the newer versions of pandas, it is replaced with
pandas.Series.values.reshape
. Is there any way to fix this without changing the version?The text was updated successfully, but these errors were encountered: