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Fix neighbors calculation #518

Fix neighbors calculation

Fix neighbors calculation #518

Workflow file for this run

name: CI
on:
push:
branches: [main]
pull_request:
branches: [main]
jobs:
# Skip CI if commit message contains `[ci skip]` in the subject
init:
runs-on: ubuntu-latest
outputs:
skip: ${{ steps.ci-skip-step.outputs.ci-skip }}
steps:
- uses: actions/checkout@v2
with:
fetch-depth: 0
- id: ci-skip-step
uses: mstachniuk/ci-skip@master
# Check if pre-commit hooks pass and if README.rst can be converted to HTML
linting:
needs: init
if: ${{ needs.init.outputs.skip == 'false' }}
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Setup Python 3.10
uses: actions/setup-python@v2
with:
python-version: "3.10"
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install pre-commit
- name: Check pre-commit compatibility
run: pre-commit run --all-files --show-diff-on-failure
# Run unit tests
test:
needs: linting
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: ["3.9", "3.10"]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: pip install -e '.[dev]'
- name: Unit tests
timeout-minutes: 60
run: python -m pytest --durations=25 --ignore=tests/datasets/test_datasets.py --hypothesis-profile=ci --cov=scvelo -vv
test-dataset-downloads:
needs: test
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Setup Python 3.10
uses: actions/setup-python@v2
with:
python-version: "3.10"
- name: Install dependencies
run: |
pip install -e .
pip install hypothesis pytest pytest-cov
- name: Test dataset downloads
timeout-minutes: 60
run: python -m pytest tests/datasets/test_datasets.py -vv