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fix datasets links
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VolkerBergen committed Aug 29, 2021
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18 changes: 9 additions & 9 deletions scvelo/datasets.py
Original file line number Diff line number Diff line change
Expand Up @@ -41,7 +41,7 @@ def toy_data(n_obs=None):
def dentategyrus(adjusted=True):
"""Dentate Gyrus neurogenesis.
Data from `Hochgerner et al. (2018) <https://doi.org/10.1038/s41593-017-0056-2 >`_.
Data from `Hochgerner et al. (2018) <https://doi.org/10.1038/s41593-017-0056-2>`__.
Dentate gyrus (DG) is part of the hippocampus involved in learning, episodic memory
formation and spatial coding. The experiment from the developing DG comprises two
Expand Down Expand Up @@ -90,7 +90,7 @@ def dentategyrus(adjusted=True):
def forebrain():
"""Developing human forebrain.
From `La Manno et al. (2018) <https://doi.org/10.1038/s41586-018-0414-6 >`_.
From `La Manno et al. (2018) <https://doi.org/10.1038/s41586-018-0414-6>`__.
Forebrain tissue of a human week 10 embryo, focusing on glutamatergic neuronal
lineage, obtained from elective routine abortions (10 weeks post-conception).
Expand All @@ -110,7 +110,7 @@ def forebrain():
def pancreas():
"""Pancreatic endocrinogenesis.
Data from `Bastidas-Ponce et al. (2019) <https://doi.org/10.1242/dev.173849 >`_.
Data from `Bastidas-Ponce et al. (2019) <https://doi.org/10.1242/dev.173849>`__.
Pancreatic epithelial and Ngn3-Venus fusion (NVF) cells during secondary transition
with transcriptome profiles sampled from embryonic day 15.5.
Expand Down Expand Up @@ -141,7 +141,7 @@ def pancreas():
def dentategyrus_lamanno():
"""Dentate Gyrus neurogenesis.
From `La Manno et al. (2018) <https://doi.org/10.1038/s41586-018-0414-6 >`_.
From `La Manno et al. (2018) <https://doi.org/10.1038/s41586-018-0414-6>`__.
The experiment from the developing mouse hippocampus comprises two time points
(P0 and P5) and reveals the complex manifold with multiple branching lineages
Expand Down Expand Up @@ -184,7 +184,7 @@ def dentategyrus_lamanno():
def gastrulation():
"""Mouse gastrulation.
Data from `Pijuan-Sala et al. (2019) <https://doi.org/10.1038/s41586-019-0933-9 >`_.
Data from `Pijuan-Sala et al. (2019) <https://doi.org/10.1038/s41586-019-0933-9>`__.
Gastrulation represents a key developmental event during which embryonic pluripotent
cells diversify into lineage-specific precursors that will generate the adult organism.
Expand Down Expand Up @@ -212,7 +212,7 @@ def gastrulation():
def gastrulation_e75():
"""Mouse gastrulation subset to E7.5.
Data from `Pijuan-Sala et al. (2019) <https://doi.org/10.1038/s41586-019-0933-9 >`_.
Data from `Pijuan-Sala et al. (2019) <https://doi.org/10.1038/s41586-019-0933-9>`__.
Gastrulation represents a key developmental event during which embryonic pluripotent
cells diversify into lineage-specific precursors that will generate the adult organism.
Expand All @@ -234,7 +234,7 @@ def gastrulation_e75():
def gastrulation_erythroid():
"""Mouse gastrulation subset to erythroid lineage.
Data from `Pijuan-Sala et al. (2019) <https://doi.org/10.1038/s41586-019-0933-9 >`_.
Data from `Pijuan-Sala et al. (2019) <https://doi.org/10.1038/s41586-019-0933-9>`__.
Gastrulation represents a key developmental event during which embryonic pluripotent
cells diversify into lineage-specific precursors that will generate the adult organism.
Expand All @@ -256,7 +256,7 @@ def gastrulation_erythroid():
def bonemarrow():
"""Human bone marrow.
Data from `Setty et al. (2019) <https://doi.org/10.1242/dev.173849 >`_.
Data from `Setty et al. (2019) <https://doi.org/10.1242/dev.173849>`__.
The bone marrow is the primary site of new blood cell production or haematopoiesis.
It is composed of hematopoietic cells, marrow adipose tissue, and supportive stromal cells.
Expand All @@ -281,7 +281,7 @@ def bonemarrow():
def pbmc68k():
"""Peripheral blood mononuclear cells.
Data from `Zheng et al. (2017) <https://doi.org/10.1038/ncomms14049 >`_.
Data from `Zheng et al. (2017) <https://doi.org/10.1038/ncomms14049>`__.
This experiment contains 68k peripheral blood mononuclear cells (PBMC) measured using 10X.
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