add recipe_velocity

theislab · Aug 22, 2018 · dc38e4e · dc38e4e
1 parent e10b7b7
commit dc38e4e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scvelo/preprocessing/__init__.py b/scvelo/preprocessing/__init__.py
@@ -56,7 +56,7 @@ def recipe_velocity(adata, min_counts=10, n_top_genes=3000, copy=False):
     filter_genes_dispersion(adata, n_top_genes=n_top_genes)
     normalize_per_cell(adata, layers='all')
     pca(adata, n_comps=30)
-    neighbors(adata, use_rep='X_pca')
+    neighbors(adata, n_neighbors=30, use_rep='X_pca')
 
     moments(adata)
     return adata if copy else None