Virtool

Virtool is a web-based application for diagnosing viral infections in plant samples using Illumina sequencing.

Software	Version	Use
AODP	2.5.0.1	Barcode-based amplicon analysis
Bowtie2	2.3.2	Read mapping for known and novel virus analysis
FastQC	0.11.8	Read quality analyis
FLASH	1.2.11	Read joining during amplicon analysis
HMMER	3.1b2	Viral motif prediction for novel virus analysis
MongoDB	3.6.0	Backing database
Skewer	0.2.2	Read trimming
SPAdes	3.11.0	Contig assembly during amplicon analysis

Name		Name	Last commit message	Last commit date
Latest commit History 6,793 Commits
.github		.github
client		client
docs		docs
static		static
templates		templates
tests		tests
virtool		virtool
.codacy.yml		.codacy.yml
.coveragerc		.coveragerc
.drone.yml		.drone.yml
.gitignore		.gitignore
.python-version		.python-version
Dockerfile		Dockerfile
LICENSE		LICENSE
contributors.txt		contributors.txt
pytest.ini		pytest.ini
readme.md		readme.md
requirements.txt		requirements.txt
run.py		run.py
setup.py		setup.py

tianshengsui/virtool