neither tidy nor glance methods work for gee objects #708
Description
Objects of class gee are not supported but because it also inherits glm class, I guess that's the tidier that gets picked up.
# setup
set.seed(123)
library(MASS)
library(gee)
data(OME)
# model
fm <-
gee(
cbind(Correct, Trials - Correct) ~ Loud + Age + OME,
id = ID,
data = OME,
family = binomial,
corstr = "exchangeable"
)
#> Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
#> running glm to get initial regression estimate
#> (Intercept) Loud Age OMEhigh OMElow
#> -5.90984676 0.15516993 0.01876291 -0.07569691 -0.31660542
# class of object
class(fm)
#> [1] "gee" "glm"
# summary
summary(fm)
#>
#> GEE: GENERALIZED LINEAR MODELS FOR DEPENDENT DATA
#> gee S-function, version 4.13 modified 98/01/27 (1998)
#>
#> Model:
#> Link: Logit
#> Variance to Mean Relation: Binomial
#> Correlation Structure: Exchangeable
#>
#> Call:
#> gee(formula = cbind(Correct, Trials - Correct) ~ Loud + Age +
#> OME, id = ID, data = OME, family = binomial, corstr = "exchangeable")
#>
#> Summary of Residuals:
#> Min 1Q Median 3Q Max
#> -0.9585811 0.5507230 2.0414189 3.1210663 12.0241951
#>
#>
#> Coefficients:
#> Estimate Naive S.E. Naive z Robust S.E. Robust z
#> (Intercept) -5.90100336 0.336455218 -17.5387482 0.231463368 -25.4943295
#> Loud 0.15507565 0.007513314 20.6401142 0.005321880 29.1392592
#> Age 0.01851319 0.003561640 5.1979385 0.003305525 5.6006793
#> OMEhigh -0.04183516 0.160288285 -0.2609995 0.152182352 -0.2749015
#> OMElow -0.28563252 0.131496124 -2.1721745 0.117510247 -2.4307031
#>
#> Estimated Scale Parameter: 1.250466
#> Number of Iterations: 4
#>
#> Working Correlation
#> [,1] [,2] [,3] [,4] [,5]
#> [1,] 1.00000000 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [2,] -0.02344803 1.00000000 -0.02344803 -0.02344803 -0.02344803
#> [3,] -0.02344803 -0.02344803 1.00000000 -0.02344803 -0.02344803
#> [4,] -0.02344803 -0.02344803 -0.02344803 1.00000000 -0.02344803
#> [5,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 1.00000000
#> [6,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [7,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [8,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [9,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [10,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [11,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [12,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [13,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [14,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [15,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [16,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [17,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [18,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [19,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [20,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [21,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [22,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [23,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [24,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [25,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [26,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [27,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [28,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [29,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [30,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [,6] [,7] [,8] [,9] [,10]
#> [1,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [2,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [3,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [4,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [5,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [6,] 1.00000000 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [7,] -0.02344803 1.00000000 -0.02344803 -0.02344803 -0.02344803
#> [8,] -0.02344803 -0.02344803 1.00000000 -0.02344803 -0.02344803
#> [9,] -0.02344803 -0.02344803 -0.02344803 1.00000000 -0.02344803
#> [10,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 1.00000000
#> [11,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [12,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [13,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [14,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [15,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [16,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [17,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [18,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [19,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [20,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [21,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [22,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [23,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [24,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [25,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [26,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [27,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [28,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [29,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [30,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [,11] [,12] [,13] [,14] [,15]
#> [1,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [2,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [3,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [4,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [5,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [6,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [7,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [8,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [9,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [10,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [11,] 1.00000000 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [12,] -0.02344803 1.00000000 -0.02344803 -0.02344803 -0.02344803
#> [13,] -0.02344803 -0.02344803 1.00000000 -0.02344803 -0.02344803
#> [14,] -0.02344803 -0.02344803 -0.02344803 1.00000000 -0.02344803
#> [15,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 1.00000000
#> [16,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [17,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [18,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [19,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [20,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [21,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [22,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [23,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [24,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [25,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [26,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [27,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [28,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [29,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [30,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [,16] [,17] [,18] [,19] [,20]
#> [1,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [2,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [3,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [4,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [5,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [6,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [7,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [8,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [9,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [10,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [11,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [12,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [13,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [14,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [15,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [16,] 1.00000000 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [17,] -0.02344803 1.00000000 -0.02344803 -0.02344803 -0.02344803
#> [18,] -0.02344803 -0.02344803 1.00000000 -0.02344803 -0.02344803
#> [19,] -0.02344803 -0.02344803 -0.02344803 1.00000000 -0.02344803
#> [20,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 1.00000000
#> [21,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [22,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [23,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [24,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [25,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [26,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [27,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [28,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [29,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [30,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [,21] [,22] [,23] [,24] [,25]
#> [1,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [2,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [3,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [4,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [5,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [6,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [7,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [8,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [9,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [10,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [11,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [12,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [13,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [14,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [15,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [16,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [17,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [18,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [19,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [20,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [21,] 1.00000000 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [22,] -0.02344803 1.00000000 -0.02344803 -0.02344803 -0.02344803
#> [23,] -0.02344803 -0.02344803 1.00000000 -0.02344803 -0.02344803
#> [24,] -0.02344803 -0.02344803 -0.02344803 1.00000000 -0.02344803
#> [25,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 1.00000000
#> [26,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [27,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [28,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [29,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [30,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [,26] [,27] [,28] [,29] [,30]
#> [1,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [2,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [3,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [4,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [5,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [6,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [7,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [8,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [9,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [10,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [11,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [12,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [13,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [14,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [15,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [16,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [17,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [18,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [19,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [20,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [21,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [22,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [23,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [24,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [25,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [26,] 1.00000000 -0.02344803 -0.02344803 -0.02344803 -0.02344803
#> [27,] -0.02344803 1.00000000 -0.02344803 -0.02344803 -0.02344803
#> [28,] -0.02344803 -0.02344803 1.00000000 -0.02344803 -0.02344803
#> [29,] -0.02344803 -0.02344803 -0.02344803 1.00000000 -0.02344803
#> [30,] -0.02344803 -0.02344803 -0.02344803 -0.02344803 1.00000000
# tidy output
broom::tidy(fm)
#> Column 6 must be named.
#> Use .name_repair to specify repair.
# glance
broom::glance(fm)
#> All columns in a tibble must be 1d or 2d objects:
#> * Column `null.deviance` is NULL
#> * Column `df.null` is NULL
#> * Column `deviance` is NULL
#> * Column `df.residual` is NULLCreated on 2019-05-28 by the reprex package (v0.3.0)
Session info
devtools::session_info()
#> - Session info ----------------------------------------------------------
#> setting value
#> version R version 3.6.0 alpha (2019-03-29 r76300)
#> os Windows 10 x64
#> system x86_64, mingw32
#> ui RTerm
#> language (EN)
#> collate English_United States.1252
#> ctype English_United States.1252
#> tz America/New_York
#> date 2019-05-28
#>
#> - Packages --------------------------------------------------------------
#> package * version date lib source
#> assertthat 0.2.1 2019-03-21 [1] CRAN (R 3.6.0)
#> backports 1.1.4 2019-04-10 [1] CRAN (R 3.6.0)
#> broom 0.5.2.9001 2019-04-09 [1] local
#> callr 3.2.0 2019-03-15 [1] CRAN (R 3.6.0)
#> cli 1.1.0 2019-03-19 [1] CRAN (R 3.6.0)
#> crayon 1.3.4 2017-09-16 [1] CRAN (R 3.5.1)
#> desc 1.2.0 2019-04-03 [1] Github (r-lib/desc@c860e7b)
#> devtools 2.0.2 2019-04-08 [1] CRAN (R 3.6.0)
#> digest 0.6.19 2019-05-20 [1] CRAN (R 3.6.0)
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