Add codecov and automatic pkgdown deployment

.Rbuildignore

@@ -1,3 +1,7 @@
+^docs$
+^_pkgdown\.yml$
+^codecov\.yml$
+^README\.Rmd$
 ^\.travis\.yml$
 ^probably\.Rproj$
 ^\.Rproj\.user$

.gitignore

@@ -2,3 +2,4 @@
 .Rhistory
 .RData
 .DS_Store
+docs

.travis.yml

@@ -4,13 +4,24 @@ language: R
 sudo: false
 cache: packages
 
-r:
-  - devel
-  - release
-  - oldrel
-  - 3.2
-  - 3.1
+r_github_packages:
+  - tidyverse/tidytemplate
 
 matrix:
+  include:
+  - r: devel
+  - r: release
+    after_success:
+    - Rscript -e 'covr::codecov()'
+
+    deploy:
+      provider: script
+      script: Rscript -e 'pkgdown::deploy_site_github(verbose = TRUE)'
+      skip-cleanup: true
+      on:
+        all_branches: true
+  - r: oldrel
+  - r: 3.2
+  - r: 3.1
   allow_failures:
   - r: 3.1

DESCRIPTION

@@ -27,8 +27,11 @@ Imports:
     vctrs,
     yardstick
 Suggests: 
-    testthat
+    testthat,
+    covr,
+    pkgdown
 Remotes:
     r-lib/vctrs,
     r-lib/generics,
-    tidymodels/yardstick
+    tidymodels/yardstick,
+    r-lib/pkgdown

README.Rmd

@@ -0,0 +1,38 @@
+---
+output: github_document
+---
+
+<!-- README.md is generated from README.Rmd. Please edit that file -->
+
+```{r setup, include = FALSE}
+knitr::opts_chunk$set(
+  collapse = TRUE,
+  comment = "#>",
+  fig.path = "man/figures/README-",
+  out.width = "100%"
+)
+```
+
+# probably
+
+[![Travis build status](https://travis-ci.org/topepo/probably.svg?branch=master)](https://travis-ci.org/topepo/probably)
+[![Codecov test coverage](https://codecov.io/gh/topepo/probably/branch/master/graph/badge.svg)](https://codecov.io/gh/topepo/probably?branch=master)
+[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://www.tidyverse.org/lifecycle/#experimental)
+
+## Introduction
+
+`probably` contains tools to facilitate activities such as:
+
+ * exploration and visualization of class probability distributions,
+ * conversion of probabilities to discrete class predictions,
+ * investigate and estimate optimal probability thresholds,
+ * inclusion of _equivocal zones_ where the probabilities are too uncertain to report a prediction, 
+ * recalibration of class probabilities.  
+
+## Installation
+
+You can install `probably` from GitHub with:
+
+```{r, eval = FALSE}
+devtools::install_github("topepo/probably")
+```

README.md

@@ -1,8 +1,30 @@
+
+<!-- README.md is generated from README.Rmd. Please edit that file -->
+
+# probably
+
+[![Travis build
+status](https://travis-ci.org/topepo/probably.svg?branch=master)](https://travis-ci.org/topepo/probably)
+[![Codecov test
+coverage](https://codecov.io/gh/topepo/probably/branch/master/graph/badge.svg)](https://codecov.io/gh/topepo/probably?branch=master)
+[![Lifecycle:
+experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://www.tidyverse.org/lifecycle/#experimental)
+
+## Introduction
+
 `probably` contains tools to facilitate activities such as:
 
- * exploration and visualization of class probability distributions,
- * conversion of probabilities to discrete class predictions,
- * investigate and estimate optimal probability thresholds,
- * inclusion of _equivocal zones_ where the probabilities are too uncertain to report a prediction, 
- * recalibration of class probabilities.  
+  - exploration and visualization of class probability distributions,
+  - conversion of probabilities to discrete class predictions,
+  - investigate and estimate optimal probability thresholds,
+  - inclusion of *equivocal zones* where the probabilities are too
+    uncertain to report a prediction,
+  - recalibration of class probabilities.
+
+## Installation
+
+You can install `probably` from GitHub with:
 
+``` r
+devtools::install_github("topepo/probably")
+```

_pkgdown.yml

@@ -0,0 +1,32 @@
+template:
+  package: tidytemplate
+  params:
+    part_of: tidymodels
+    footer: probably is a part of the tidymodels ecosystem, a collection of modeling packages designed with common APIs and a shared philosophy.
+
+development:
+  mode: auto
+
+home:
+  strip_header: true
+
+reference:
+- title: Class predictions
+  contents:
+  - class_pred
+  - matches("_class_pred")
+  - reportable_rate
+  - threshold_perf
+  - locate-equivocal
+  - levels.class_pred
+
+- title: Vctrs compatibility
+  contents:
+  - vec_cast.class_pred
+  - vec_type2.class_pred
+
+- title: Data
+  contents:
+  - segment_naive_bayes
+  - segment_logistic
+  - species_probs

codecov.yml

@@ -0,0 +1,12 @@
+comment: false
+
+coverage:
+  status:
+    project:
+      default:
+        target: auto
+        threshold: 1%
+    patch:
+      default:
+        target: auto
+        threshold: 1%