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Etna 797 #110

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merged 15 commits into from Oct 4, 2021
Merged

Etna 797 #110

merged 15 commits into from Oct 4, 2021

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@alex-hse-repository alex-hse-repository commented Sep 28, 2021

IMPORTANT: Please do not create a Pull Request without creating an issue first.

Before submitting (must do checklist)

  • Did you read the contribution guide?
  • Did you update the docs? We use Numpy format for all the methods and classes.
  • Did you write any new necessary tests?
  • Did you update the CHANGELOG?

Type of Change

  • Examples / docs / tutorials / contributors update
  • Bug fix (non-breaking change which fixes an issue)
  • Improvement (non-breaking change which improves an existing feature)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to change)

Proposed Changes

Add Clustering

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codecov-commenter commented Sep 29, 2021

Codecov Report

Merging #110 (3ac73b1) into master (751347c) will increase coverage by 0.00%.
The diff coverage is 88.10%.

Impacted file tree graph

@@           Coverage Diff            @@
##           master     #110    +/-   ##
========================================
  Coverage   88.05%   88.06%            
========================================
  Files          55       66    +11     
  Lines        2554     2865   +311     
========================================
+ Hits         2249     2523   +274     
- Misses        305      342    +37     
Impacted Files Coverage Δ
etna/clustering/distances/dtw_distance.py 69.31% <69.31%> (ø)
etna/clustering/base.py 83.33% <83.33%> (ø)
etna/clustering/distances/base.py 88.09% <88.09%> (ø)
etna/clustering/distances/distance_matrix.py 94.82% <94.82%> (ø)
etna/clustering/__init__.py 100.00% <100.00%> (ø)
etna/clustering/distances/__init__.py 100.00% <100.00%> (ø)
etna/clustering/distances/euclidean_distance.py 100.00% <100.00%> (ø)
etna/clustering/hierarchical/__init__.py 100.00% <100.00%> (ø)
etna/clustering/hierarchical/base.py 100.00% <100.00%> (ø)
etna/clustering/hierarchical/dtw_clustering.py 100.00% <100.00%> (ø)
... and 1 more

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@alex-hse-repository alex-hse-repository marked this pull request as ready for review September 29, 2021 11:08
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Note: The DistanceMatrix version for new architecture shows the same time as the old one in computing distance matrix

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@martins0n martins0n left a comment

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  • We should add basic example to DTWClustering and EuclideanClustering class docstrings.
  • np.array to np.ndarray in type
  • check docsting for proper Result section. Sometimes typing is missing.

etna/clustering/base.py Outdated Show resolved Hide resolved
etna/clustering/base.py Outdated Show resolved Hide resolved
etna/clustering/base.py Outdated Show resolved Hide resolved
etna/clustering/distances/base.py Outdated Show resolved Hide resolved
etna/clustering/distances/base.py Outdated Show resolved Hide resolved
etna/clustering/distances/distance_matrix.py Outdated Show resolved Hide resolved
etna/clustering/distances/distance_matrix.py Outdated Show resolved Hide resolved
etna/clustering/distances/distance_matrix.py Outdated Show resolved Hide resolved
etna/clustering/hierarchical/base.py Show resolved Hide resolved
etna/clustering/hierarchical/base.py Outdated Show resolved Hide resolved
"""Compute distance matrix for given series."""
distances = np.empty(shape=(self.series_number, self.series_number))
logging_freq = self.series_number // 10
logger_id = tslogger.add(ConsoleLogger())
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@martins0n martins0n Oct 1, 2021

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You shouldn't do this. Tslogger is as global object and all handlers've added already.
tslogger.start_experiment() and this too. Look at code examples https://github.com/tinkoff-ai/etna-ts/blob/51afbc2df6d046e3c2ab9b102f50fc7c83529f5a/etna/datasets/tsdataset.py#L122

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