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Download PubMed OA figures
Titipat Achakulvisut edited this page Jan 21, 2020
·
1 revision
Here, we explain how to download PubMed OA figures corresponded to the parsed information
- In
pubmed_parser
, you can useparse_pubmed_caption
to parse figures (to be specificfigure_id
) and captions corresponding to a manuscript. - To download the images corresponding to a given
PMC
orPMID
, you can download a CSV file fromftp://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_file_list.csv
first. - The file will have columnsPMID
,Accession ID
(PMC
), andFile
where it looks something likeoa_package/08/e0/PMC13900.tar.gz
. - You can then download a tar file for a given
PMID
orPMC
fromftp://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_package/08/e0/PMC13900.tar.gz
. You can check outftp://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_package/
to get all the access for tar files.