Roundup database

[omranian]

Dear Todd,

Sorry to spam you here. I couldn't get any email from you in google.

I’m interested to have the Roundup database to get access to the phylogenetic profiles; however, the provided website in your publication is not available:
http://roundup.hms.harvard.edu

I would appreciate it a lot if you could please share with me the Roundup database, I’m interested in A. th. ’s phylogenetic profiles.

Thanks a lot in advance.

Kind regards,
Nooshin

--
Dr. Nooshin Omranian,
Systems Biology and Mathematical Modeling Max-Planck-Institute of Molecular Plant Physiology Am Mühlenberg 1
14476 Potsdam, Germany
phone +49 (0)331 567-8548

[todddeluca]

Dear Nooshin, Thanks for reaching out! I'm sorry to say that Roundup is a dead project and no longer available online. The code for the website and computation pipeline is available at https://github.com/walllab/roundup. Theoretically, it could be run on your local computer or computational cluster, though it would probably be a bit of work to get it running. The code for the underlying orthology algorithm is available in this repository. Here is a list of some other orthology projects that might have what you want: https://questfororthologs.org/orthology_databases. Please reach out if you have any questions. I'm happy to help. Best regards, Todd

…

-- Todd DeLuca PhD Student, Complex Systems and Data Science University of Vermont todd.deluca@uvm.edu

On Thu, Feb 28, 2019 at 7:21 AM Nooshin Omranian ***@***.***> wrote: Dear Todd, Sorry to spam you here. I couldn't get any email from you in google. I’m interested to have the Roundup database to get access to the phylogenetic profiles; however, the provided website in your publication is not available: http://roundup.hms.harvard.edu I would appreciate it a lot if you could please share with me the Roundup database, I’m interested in A. th. ’s phylogenetic profiles. Thanks a lot in advance. Kind regards, Nooshin -- Dr. Nooshin Omranian, Systems Biology and Mathematical Modeling Max-Planck-Institute of Molecular Plant Physiology Am Mühlenberg 1 14476 Potsdam, Germany phone +49 (0)331 567-8548 — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#5>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AANKqUOeg0vCP52uzyUdU6xSKHryHEMHks5vR8m7gaJpZM4bWsYc> .