Updated website address to GitHub URL

tomdoel · Jul 3, 2015 · 187bac9 · 187bac9
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diff --git a/External/npReg/biharmonic2DSolve.m b/External/npReg/biharmonic2DSolve.m
@@ -23,7 +23,7 @@
 % licence: GNU GPL v3 licence.
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 
 
 

diff --git a/External/npReg/genRegularizer2DSolve.m b/External/npReg/genRegularizer2DSolve.m
@@ -34,7 +34,7 @@
 % licence: GNU GPL v3 licence.
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 
 % parse input arguments
 [F,Alpha,BoundCond,NumPix] = parseInputs(varargin{:});

diff --git a/External/npReg/npReg.m b/External/npReg/npReg.m
@@ -39,7 +39,7 @@
 % licence: GNU GPL v3 licence.
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 
 % ------------Initialization----------------
 

diff --git a/External/npReg/npRegGet.m b/External/npReg/npRegGet.m
@@ -23,7 +23,7 @@
 % licence: GNU GPL v3 licence.
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 
 % undocumented usage for fast access with no error checking
 if (nargin == 4) && isequal(flag,'fast')

diff --git a/External/npReg/npRegLib/bodyForceSSD.m b/External/npReg/npRegLib/bodyForceSSD.m
@@ -21,7 +21,7 @@
 % licence: GNU GPL v3 licence.
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/curvatureDirichlet2D.m b/External/npReg/npRegLib/curvatureDirichlet2D.m
@@ -10,7 +10,7 @@
 % licence: GNU GPL v3 licence.
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/curvatureDirichlet3D.m b/External/npReg/npRegLib/curvatureDirichlet3D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3 licence.
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/curvatureNeumann2D.m b/External/npReg/npRegLib/curvatureNeumann2D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3 licence.
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/curvatureNeumann3D.m b/External/npReg/npRegLib/curvatureNeumann3D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3 licence.
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/curvaturePeriodic2D.m b/External/npReg/npRegLib/curvaturePeriodic2D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3 licence.
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/curvaturePeriodic3D.m b/External/npReg/npRegLib/curvaturePeriodic3D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/dbquiy.m b/External/npReg/npRegLib/dbquiy.m
@@ -10,7 +10,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/diffusionDirichlet3D.m b/External/npReg/npRegLib/diffusionDirichlet3D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/diffusionNeumann2D.m b/External/npReg/npRegLib/diffusionNeumann2D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/diffusionNeumann3D.m b/External/npReg/npRegLib/diffusionNeumann3D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/diffusionPeriodic2D.m b/External/npReg/npRegLib/diffusionPeriodic2D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/diffusionPeriodic3D.m b/External/npReg/npRegLib/diffusionPeriodic3D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/elasticDirichlet2D.m b/External/npReg/npRegLib/elasticDirichlet2D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/elasticDirichlet3D.m b/External/npReg/npRegLib/elasticDirichlet3D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/elasticNeumann2D.m b/External/npReg/npRegLib/elasticNeumann2D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/elasticNeumann3D.m b/External/npReg/npRegLib/elasticNeumann3D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/elasticPeriodic2D.m b/External/npReg/npRegLib/elasticPeriodic2D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/elasticPeriodic3D.m b/External/npReg/npRegLib/elasticPeriodic3D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/fluidDirichlet2D.m b/External/npReg/npRegLib/fluidDirichlet2D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/fluidDirichlet3D.m b/External/npReg/npRegLib/fluidDirichlet3D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/fluidNeumann2D.m b/External/npReg/npRegLib/fluidNeumann2D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/fluidNeumann3D.m b/External/npReg/npRegLib/fluidNeumann3D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/fluidPeriodic2D.m b/External/npReg/npRegLib/fluidPeriodic2D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/fluidPeriodic3D.m b/External/npReg/npRegLib/fluidPeriodic3D.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/genNpReg.m b/External/npReg/npRegLib/genNpReg.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/genNpReg2.m b/External/npReg/npRegLib/genNpReg2.m
@@ -9,7 +9,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/npRegOptionCheckField.m b/External/npReg/npRegLib/npRegOptionCheckField.m
@@ -13,7 +13,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegLib/npRegOptionGetFields.m b/External/npReg/npRegLib/npRegOptionGetFields.m
@@ -20,7 +20,7 @@
 % licence: GNU GPL v3
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/External/npReg/npRegSet.m b/External/npReg/npRegSet.m
@@ -108,7 +108,7 @@
 % licence: GNU GPL v3 licence.
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 
 
 

diff --git a/External/npReg/poisson2DSolve.m b/External/npReg/poisson2DSolve.m
@@ -23,7 +23,7 @@
 % licence: GNU GPL v3 licence.
 %
 % This code is copyright Nathan D. Cahill and has been distributed as part of the
-% Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+% Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
 %
 %
 

diff --git a/Framework/PTKCheckMatlabVersion.m b/Framework/PTKCheckMatlabVersion.m
@@ -5,7 +5,7 @@
     %
     %     Licence
     %     -------
-    %     Part of the TD Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+    %     Part of the TD Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
     %     Author: Tom Doel, 2012.  www.tomdoel.com
     %     Distributed under the GNU GPL v3 licence. Please see website for details.
     %

diff --git a/Framework/PTKClassMonitor.m b/Framework/PTKClassMonitor.m
@@ -7,7 +7,7 @@
     %
     %     Licence
     %     -------
-    %     Part of the TD Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+    %     Part of the TD Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
     %     Author: Tom Doel, 2014.  www.tomdoel.com
     %     Distributed under the GNU GPL v3 licence. Please see website for details.
     %    

diff --git a/Framework/PTKCompileMexFiles.m b/Framework/PTKCompileMexFiles.m
@@ -20,7 +20,7 @@ function PTKCompileMexFiles(framework_cache, force_recompile, reporting)
     %
     %     Licence
     %     -------
-    %     Part of the TD Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+    %     Part of the TD Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
     %     Author: Tom Doel, 2012.  www.tomdoel.com
     %     Distributed under the GNU GPL v3 licence. Please see website for details.
     %

diff --git a/Framework/PTKContextHierarchy.m b/Framework/PTKContextHierarchy.m
@@ -31,7 +31,7 @@
     %
     %     Licence
     %     -------
-    %     Part of the TD Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+    %     Part of the TD Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
     %     Author: Tom Doel, 2012.  www.tomdoel.com
     %     Distributed under the GNU GPL v3 licence. Please see website for details.
     %    

diff --git a/Framework/PTKCreateTemplateForLobe.m b/Framework/PTKCreateTemplateForLobe.m
@@ -4,7 +4,7 @@
     %
     %     Licence
     %     -------
-    %     Part of the TD Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+    %     Part of the TD Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
     %     Author: Tom Doel, 2013.  www.tomdoel.com
     %     Distributed under the GNU GPL v3 licence. Please see website for details.
     %

diff --git a/Framework/PTKCreateTemplateForLungROI.m b/Framework/PTKCreateTemplateForLungROI.m
@@ -5,7 +5,7 @@
     %
     %     Licence
     %     -------
-    %     Part of the TD Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+    %     Part of the TD Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
     %     Author: Tom Doel, 2012.  www.tomdoel.com
     %     Distributed under the GNU GPL v3 licence. Please see website for details.
     %    

diff --git a/Framework/PTKCreateTemplateForLungs.m b/Framework/PTKCreateTemplateForLungs.m
@@ -5,7 +5,7 @@
     %
     %     Licence
     %     -------
-    %     Part of the TD Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+    %     Part of the TD Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
     %     Author: Tom Doel, 2013.  www.tomdoel.com
     %     Distributed under the GNU GPL v3 licence. Please see website for details.
     %    

diff --git a/Framework/PTKCreateTemplateForOriginalImage.m b/Framework/PTKCreateTemplateForOriginalImage.m
@@ -5,7 +5,7 @@
     %
     %     Licence
     %     -------
-    %     Part of the TD Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+    %     Part of the TD Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
     %     Author: Tom Doel, 2012.  www.tomdoel.com
     %     Distributed under the GNU GPL v3 licence. Please see website for details.
     %    

diff --git a/Framework/PTKCreateTemplateForSegment.m b/Framework/PTKCreateTemplateForSegment.m
@@ -4,7 +4,7 @@
     %
     %     Licence
     %     -------
-    %     Part of the TD Pulmonary Toolkit. http://code.google.com/p/pulmonarytoolkit
+    %     Part of the TD Pulmonary Toolkit. https://github.com/tomdoel/pulmonarytoolkit
     %     Author: Tom Doel, 2013.  www.tomdoel.com
     %     Distributed under the GNU GPL v3 licence. Please see website for details.
     %