A Haskell script for creating random single nucleotide variants within genomic region(s) using a genomic window string.
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Updated
Mar 4, 2021 - Haskell
A Haskell script for creating random single nucleotide variants within genomic region(s) using a genomic window string.
A Haskell script that performs hierarchical filtering on a tab-delimited file across groups of lines based on user-defined hierarchical filtering string.
A Haskell script that performs knuth-morris-pratt string search across a region of fasta file for ambiguity codes, and determines whether variants are found in ambiguity codes.
A Haskell script for selecting variants from a variant calling format (vcf) file based on variants present in a mgibed file.
A Haskell script that creates a master variant file given sample information and variant information.
A Haskell script for creating input files for bam-readcount from ensembl-vep output and variant-calling format (vcf) files.
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