MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
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Updated
Apr 20, 2022 - C++
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
K-mer counting with low memory consumption enables de novo assembly of 106x human sequence data in 2.7 hours
A fork of the original https://github.com/medvedevgroup/UST tool.
PoC - De Bruijn graph with PGMIndex
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