Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
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Updated
Jul 14, 2024 - Python
Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.
An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files
A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
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