Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
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Updated
Mar 5, 2018 - C
Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
Phasing reads with secondary alignments
Calculate Peak-to-Trough Ratio (PTR), plot coverage graph, and perform quality control over contigs in a single pipeline integrating Glimmer3, Bowtie2, Sickle, and algorithms in R.
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