Source files for building the IDM EMOD disease transmission model.
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Updated
Jan 30, 2022 - C++
Source files for building the IDM EMOD disease transmission model.
dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
Spatial individual-based model of malaria with a focus on drug resistance evolution.
MicrOscopic VisuAlization of BLood cElls for the Detection of Malaria and CD4+
An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infe…
Complete source code and intermediary files to accompany the manuscript published in PLOS Global Public Health.
Complete source code and intermediary files to accompany the manuscript published in Nature Medicine.
Complete source code and intermediary files to accompany the manuscript.
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