Docker container for FiberNavigator for Brainlife.io
-
Updated
Nov 24, 2018 - Shell
Docker container for FiberNavigator for Brainlife.io
Tract Segmentation from input tractography using ROIs
Scripts for MRI preprocessing
Brainlife wrapper app for dipy_track workflows.
Brainlife wrapper app for dipy_track_pft workflows.
Code for processing DTI data and performing tractography analyses
Brainlife App (wrapper) for dMRI based fiber tracking between ROIs using parallel transport tractography
Scripts related to "White Matter Microstructure in Attention-Deficit/Hyperactivity Disorder: A Systematic Tractography Study in 654 Individuals"
Runs mrtrix3 ACT (Anatomically Constrained Tractography) using either single- or multi-shell diffusion-weighted MRI data.
Run the recommended preprocessing procedure provided by mrtrix3. The options available mostly reflect the optimal DESIGNER pipeline that was recently proposed. This App runs for >15 on topup if both PA and AP dwi files are provided. It detects bvecs flipping (dwigradcheck) and update the gradient table accordingly.
Automated tractography using MRTrix3 CSD based on subject-specific parcellations from FreeSurfer and MultiScaleBrainParcellator
Add a description, image, and links to the tractography topic page so that developers can more easily learn about it.
To associate your repository with the tractography topic, visit your repo's landing page and select "manage topics."