R tools to mine & craft somatic mutations from cancer genomes
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Updated
May 23, 2017 - R
R tools to mine & craft somatic mutations from cancer genomes
R-package to analyse and quantify aberrations in DNA-sequencing data
Whole genome sequence analysis for donor-recipient pairs
Exploratory analysis for donor-recipient whole genome sequences
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
Analysis and plotting functions for structural variant breakpoint data
GREMLIN: Genomic REarrangements by Machine Learning-based INspection
Investigate the role of mtDNA in the sex determination of freshwater mussels with doubly uniparental mitochondrial inheritance. Scripts for DESeq2, WGCNA, GSEA, AlphaFold/AlphaPulldown, and mt-sncRNA validation.
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
Data and code repository for study aiming to understand ESBL carriage in Blantyre, Malawi
An R package for performing MultiSTAAR procedure in whole-genome sequencing studies
ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.
An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
An app for automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data using FAVORannotator in UK Biobank RAP
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
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