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@treangenlab

Treangen Lab

Treangen Lab @ Rice University

Popular repositories

  1. methphaser methphaser Public

    MethPhaser: methylation-based haplotype phasing of human genomes

    Python 35

  2. emu emu Public

    Python 16

  3. Olivar Olivar Public

    Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing

    Python 14 1

  4. radmicrobes radmicrobes Public

    2023 RAD microbes boot camp

    HTML 7

  5. crykey crykey Public

    Python 6

  6. komb komb Public

    KOMB is a tool for fast identification of unitigs of interest in metagenomes. KOMB introduces the concept of a Hybrid Unitig Graph (an extension to compacted de Bruijn graphs) and relies on k-core …

    C++ 5

Repositories

Showing 10 of 11 repositories
  • crykey_analysis_scripts Public
    Jupyter Notebook 1 0 0 0 Updated Apr 2, 2024
  • lemur Public

    Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

    Python 1 MIT 0 1 0 Updated Apr 1, 2024
  • magnet Public
    Jupyter Notebook 1 0 0 0 Updated Mar 14, 2024
  • Olivar Public

    Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing

    Python 14 MIT 1 5 0 Updated Feb 17, 2024
  • wasterwater_arg_metagenomics Public
    Jupyter Notebook 0 0 0 0 Updated Feb 8, 2024
  • rhea Public

    Recognizing HGT Events in Assemblies

    Python 3 MIT 0 0 0 Updated Jan 30, 2024
  • radmicrobes Public

    2023 RAD microbes boot camp

    HTML 7 MIT 0 0 0 Updated Dec 18, 2023
  • crykey Public
    Python 6 MIT 0 0 0 Updated Nov 20, 2023
  • emu Public
    Python 16 MIT 0 5 2 Updated Nov 3, 2023
  • komb Public

    KOMB is a tool for fast identification of unitigs of interest in metagenomes. KOMB introduces the concept of a Hybrid Unitig Graph (an extension to compacted de Bruijn graphs) and relies on k-core and K-truss decomposition algorithms.

    C++ 5 GPL-2.0 0 1 1 Updated Sep 28, 2023
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