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README.md

trisdesclous: spike sorting with a French touch.

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Authors: Christophe Pouzat and Samuel Garcia

documentation

The documentation is here: http://tridesclous.readthedocs.io/

overview

tris des clous is a very dishonest translation of spike sorting to French.

Pronouce it [tree day clue] in English.

The primary goal of tridesclous was to provide a toolkit to teach good practices in spike sorting techniques. Trideslcous is now mature and can be used to sort spike on tetrode up to neuropixel probe recorded dataset.

Tridesclous is both:

  • an offline spike sorter tools able to read many file format
  • a realtime spike sorting combined with pyacq

Main features

  • template matching based method
  • several alternative methods at several processing steps of the chain
  • Qt GUI for interactive exploration
  • a simple python API to use in a notebook or to build a custom pipeline
  • support for many data formats (Raw, Blackrock, Neuralynx, Plexon, Spike2, Tdt, OpenEphys, ...) via neo
  • hardware acceleration with opencl: both GPU and multicore CPU
  • smaller memory footprint
  • built-in sample datasets to try on
  • quite fast for tetrode datasets -- expect x30 speedup over real time on a simple laptop
  • multi-platform
  • open source based on a true open source stack

The forest of spike sorting tools is dense and tridesclous is a new tree. Be curious and try it.

Installation

http://tridesclous.readthedocs.io/en/latest/installation.html

Launch

http://tridesclous.readthedocs.io/en/latest/launch.html

Screenshots

Offline Catalogue Window

snapshot

offline Peeler Window

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Online Peeler in a pyacq.Node

snapshot

Status

readthedocs CircleCI Appveyor

About

offline/online spike sorting. Un logiciel de gauche qui ne fait pas d'amalgame entre la classe et la coquetterie.

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