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Issues with upgrade of Chado v1.11 -> v1.2 -> v1.3 #55

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spficklin opened this issue Apr 1, 2017 · 1 comment
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Issues with upgrade of Chado v1.11 -> v1.2 -> v1.3 #55

spficklin opened this issue Apr 1, 2017 · 1 comment
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bug - confirmed For issues where a core developer has confirmed a bug exists. Tripal 3 Any issue or pull requuest focused on Tripal 3

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@spficklin
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Copied issue from Drupal issue queue: https://www.drupal.org/node/2754831

During an upgrade of a Chado v1.2 database to v1.3 an error occured that prevent the upgrade using the Tripal upgrader. The view so.unorient_intra_transposition uses the feature table and when that table is altered to change ints to bigints for Chado v1.3 the upgrade crashes. This View is created in Chado v1.11 but is not present in Chado v1.2. Therefore the upgrade script to Chado v1.3 does not consider this view and the upgrade fails with an error.
@laceysanderson laceysanderson added bug - confirmed For issues where a core developer has confirmed a bug exists. tripal-7.x-2.x Tripal 3 Any issue or pull requuest focused on Tripal 3 labels Apr 1, 2017
@spficklin
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The deafult_schema-1.2-1.3.diff file now handles this and I believe the problem is resolved. I have recently upgraded a Tv1 site to Tv3 without encountering this problem.

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bug - confirmed For issues where a core developer has confirmed a bug exists. Tripal 3 Any issue or pull requuest focused on Tripal 3
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