Tripal
Pinned repositories
This module is for integration of Tripal and a remote Galaxy Instance
Mainlab Tripal Data Display: extending the display of a Tripal database
Docker container for Tripal 2 and Tripal 3
The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.
An Examples module for Tripal Development
Mainlab Chado Search: enabling advanced search function for a Tripal/Chado database
DEVELOPMENT Repo for Tripal Blast. For official releases & documentation go to drupal.org
This module is responsible for displaying reports from Gene Ontology (GO) analyses. This module contains a Gene Ontology Annotation Format (GAF) file loader to import GO terms assigned to features. Otherwise, GO assignments must already be loaded into the Tripal database using other data loaders (e.g. using the Tripal InterPro Analysis module or…
Provides Tripal integration of biological networks including storage, loaders and visualzations
This module extends the Tripal Analysis Module and provides a method for loading of KEGG ortholog assignments derived from the KEGG Automated Annotation Server (KAAS). The module reads the compressed .heir file or alternatively an expanded heir directory. KEGG assignments appear on each feature page, and a full KEGG report is available for brows…
This module extends the Tripal Analysis Module and provides a method for loading XML results from the NCBI blast program. Blast results appear on each feature page.
This module extends the Tripal Analysis Module and provides visualization of Unigenes derived from ESTs. Currently, a web-based loader is not available, however, once a unigene is loaded into Chado, this module will provide listings of available Unigenes constructed for each organism and link features to their respective Unigenes.
This module extends the Tripal Analysis Module and provides a method for loading XML results from the InterProScan program. The module can load InterProScan XML v4 or InterProScan XML v5 generated from the command-line or web-based versions of InterProScan. Additionally, GO terms mapped by InterProScan can optionally be assigned to features.
Extension module for the Tripal toolset to show differential expression data. This module was made for Drupal 7, Tripal 2, and Chado 1.2.
Provides a field storage implementation for BAM files.
Integration of Tripal with Apollo
Mainlab Chado Loader
An API for implementing download functionality.
This module can be used to develop functional tests on Tripal extensions that can be run on an existing site without disturbing its content.
Unit Testing for Tripal
An example module released during PAG 2017 hackathon, that displays a D3JS tree from the phylonode table.
