@tripal

Tripal

An open-source toolkit for construction of genomic, genetic, breeding and biological databases.

  • This module is for integration of Tripal and a remote Galaxy Instance

    PHP Updated Mar 1, 2017
  • Unit Testing for Tripal

    PHP Updated Feb 28, 2017
  • Mainlab Tripal Data Display: extending the display of a Tripal database

    PHP Updated Feb 27, 2017
  • The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.

    PLpgSQL 10 12 Updated Feb 27, 2017
  • This module extends the Tripal Analysis Module and provides a method for loading XML results from the InterProScan program. The module can load InterProScan XML v4 or InterProScan XML v5 generated from the command-line or web-based versions of InterProScan. Additionally, GO terms mapped by InterProScan can optionally be assigned to features.

    PHP 3 Updated Feb 24, 2017
  • Mainlab Chado Search: enabling advanced search function for a Tripal/Chado database

    PHP Updated Feb 17, 2017
  • PHP 3 Updated Feb 17, 2017
  • Extension module for the Tripal toolset to show differential expression data. This module was made for Drupal 7, Tripal 2, and Chado 1.2.

    PHP 1 2 Updated Feb 7, 2017
  • This module can be used to develop functional tests on Tripal extensions that can be run on an existing site without disturbing its content.

    PHP Updated Feb 7, 2017
  • An example module released during PAG 2017 hackathon, that displays a D3JS tree from the phylonode table.

    JavaScript Updated Feb 1, 2017
  • DEVELOPMENT Repo for Tripal Blast. For official releases & documentation go to drupal.org

    PHP 2 6 Updated Jan 31, 2017
  • An API for implementing download functionality.

    PHP 2 Updated Jan 27, 2017
  • This module extends the Tripal Analysis Module and provides a method for loading XML results from the NCBI blast program. Blast results appear on each feature page.

    PHP 3 Updated Jan 14, 2017
  • Provides Tripal integration of biological networks including storage, loaders and visualzations

    JavaScript Updated Dec 22, 2016
  • Mainlab Chado Loader

    PHP Updated Dec 15, 2016
  • This module is responsible for displaying reports from Gene Ontology (GO) analyses. This module contains a Gene Ontology Annotation Format (GAF) file loader to import GO terms assigned to features. Otherwise, GO assignments must already be loaded into the Tripal database using other data loaders (e.g. using the Tripal InterPro Analysis module or…

    PHP 3 Updated Dec 2, 2016
  • This module extends the Tripal Analysis Module and provides a method for loading of KEGG ortholog assignments derived from the KEGG Automated Annotation Server (KAAS). The module reads the compressed .heir file or alternatively an expanded heir directory. KEGG assignments appear on each feature page, and a full KEGG report is available for brows…

    PHP 2 Updated Nov 21, 2016
  • This module extends the Tripal Analysis Module and provides visualization of Unigenes derived from ESTs. Currently, a web-based loader is not available, however, once a unigene is loaded into Chado, this module will provide listings of available Unigenes constructed for each organism and link features to their respective Unigenes.

    PHP Updated Feb 11, 2016