Find all sequences within a Hamming distance of a query sequence. Both the query and the database need to be in FASTA format and aligned to the same reference.
# FIXME
% klosham -q focal.afa -d db.afa
klosham is written in C to the C99 standard and only depends on zlib.
conda install -c bioconda -c conda-forge klosham
git clone https://github.com/tseemann/klosham.git
cd klosham
make
# run tests
make check
# optionally install to a specific location (default: /usr/local)
make PREFIX=/usr/local install
FIXME
Prints the name and version separated by a space in standard Unix fashion.
klosham 1.2.3
Don't print informational messages, only errors.
Report bugs and give suggesions on the Issues page