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NRS384_contig000001 2460777 . CAGTAGGATACATTG CG 4140.99 . AB=0;ABP=0;AC=1;AF=1;AN=1;AO=140;CIGAR=1M13D1M;DP=140;DPB=21;DPRA=0;EPP=9.21451;EPPR=0;GTI=0;LEN=13;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=953.498;PAIRED=1;PAIREDR=0;PAO=17.5;PQA=577.5;PQR=514.5;PRO=15.5;QA=4536;QR=0;RO=0;RPL=86;RPP=18.8931;RPPR=0;RPR=54;RUN=1;SAF=54;SAP=18.8931;SAR=86;SRF=0;SRP=0;SRR=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1:140:0:0:140:4536:-414.099,0
The text was updated successfully, but these errors were encountered:
Kludge to resolve freebayes -F missing deletions (Issue #35)
f37e3b2
I've filed it at freebayes/freebayes#207
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Major rewrite of VCF filtering to resolve missing indels (Issue #35)
42ef3d6
tseemann
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NRS384_contig000001 2460777 . CAGTAGGATACATTG CG 4140.99 . AB=0;ABP=0;AC=1;AF=1;AN=1;AO=140;CIGAR=1M13D1M;DP=140;DPB=21;DPRA=0;EPP=9.21451;EPPR=0;GTI=0;LEN=13;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=953.498;PAIRED=1;PAIREDR=0;PAO=17.5;PQA=577.5;PQR=514.5;PRO=15.5;QA=4536;QR=0;RO=0;RPL=86;RPP=18.8931;RPPR=0;RPR=54;RUN=1;SAF=54;SAP=18.8931;SAR=86;SRF=0;SRP=0;SRR=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1:140:0:0:140:4536:-414.099,0
The text was updated successfully, but these errors were encountered: